Hb_001115_010

Information

Type -
Description -
Location Contig1115: 24277-32124
Sequence    

Annotation

kegg
ID rcu:RCOM_0246200
description AMP dependent CoA ligase, putative (EC:1.13.12.7)
nr
ID XP_012074070.1
description PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]
swissprot
ID O24145
description 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1
trembl
ID A0A067KVV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08679 PE=4 SV=1
Gene Ontology
ID GO:0003824
description 4-coumarate-- ligase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03502: 25251-32085 , PASA_asmbl_03503: 27434-31282
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001115_010 0.0 - - PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]
2 Hb_016120_020 0.1156183887 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]
3 Hb_004241_050 0.1231973062 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
4 Hb_128582_010 0.1352050254 - - -
5 Hb_080068_010 0.1453669128 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
6 Hb_003504_010 0.1565303175 - - hypothetical protein POPTR_0013s04290g [Populus trichocarpa]
7 Hb_002054_090 0.1568638531 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
8 Hb_000106_060 0.1617759668 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
9 Hb_000098_210 0.1669383032 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
10 Hb_041063_010 0.166959697 - - Disease resistance protein RFL1, putative [Ricinus communis]
11 Hb_000059_110 0.1670690186 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
12 Hb_000429_030 0.1684961182 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_060236_010 0.1701145571 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
14 Hb_002374_060 0.1704006279 - - amino acid transporter, putative [Ricinus communis]
15 Hb_003371_040 0.1712592088 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
16 Hb_007161_020 0.1735047353 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
17 Hb_001610_060 0.1771279981 - - hypothetical protein TRIUR3_12067 [Triticum urartu]
18 Hb_082733_010 0.1771789559 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
19 Hb_000959_150 0.1818736971 - - PREDICTED: uncharacterized protein LOC104879927 [Vitis vinifera]
20 Hb_131417_010 0.184432895 - - hypothetical protein POPTR_0011s066602g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_001115_010 Hb_001115_010 Hb_016120_020 Hb_016120_020 Hb_001115_010--Hb_016120_020 Hb_004241_050 Hb_004241_050 Hb_001115_010--Hb_004241_050 Hb_128582_010 Hb_128582_010 Hb_001115_010--Hb_128582_010 Hb_080068_010 Hb_080068_010 Hb_001115_010--Hb_080068_010 Hb_003504_010 Hb_003504_010 Hb_001115_010--Hb_003504_010 Hb_002054_090 Hb_002054_090 Hb_001115_010--Hb_002054_090 Hb_016120_020--Hb_003504_010 Hb_000856_250 Hb_000856_250 Hb_016120_020--Hb_000856_250 Hb_001610_060 Hb_001610_060 Hb_016120_020--Hb_001610_060 Hb_002374_060 Hb_002374_060 Hb_016120_020--Hb_002374_060 Hb_000032_340 Hb_000032_340 Hb_016120_020--Hb_000032_340 Hb_060236_010 Hb_060236_010 Hb_004241_050--Hb_060236_010 Hb_041063_010 Hb_041063_010 Hb_004241_050--Hb_041063_010 Hb_000059_110 Hb_000059_110 Hb_004241_050--Hb_000059_110 Hb_082733_010 Hb_082733_010 Hb_004241_050--Hb_082733_010 Hb_000563_620 Hb_000563_620 Hb_004241_050--Hb_000563_620 Hb_001821_030 Hb_001821_030 Hb_128582_010--Hb_001821_030 Hb_004875_040 Hb_004875_040 Hb_128582_010--Hb_004875_040 Hb_000098_210 Hb_000098_210 Hb_128582_010--Hb_000098_210 Hb_001369_530 Hb_001369_530 Hb_128582_010--Hb_001369_530 Hb_128582_010--Hb_000059_110 Hb_113945_010 Hb_113945_010 Hb_080068_010--Hb_113945_010 Hb_007161_020 Hb_007161_020 Hb_080068_010--Hb_007161_020 Hb_080068_010--Hb_004241_050 Hb_080068_010--Hb_016120_020 Hb_003371_040 Hb_003371_040 Hb_080068_010--Hb_003371_040 Hb_000106_060 Hb_000106_060 Hb_080068_010--Hb_000106_060 Hb_003504_010--Hb_000856_250 Hb_003504_010--Hb_001610_060 Hb_000897_010 Hb_000897_010 Hb_003504_010--Hb_000897_010 Hb_001775_060 Hb_001775_060 Hb_003504_010--Hb_001775_060 Hb_004631_030 Hb_004631_030 Hb_002054_090--Hb_004631_030 Hb_002054_090--Hb_041063_010 Hb_000297_220 Hb_000297_220 Hb_002054_090--Hb_000297_220 Hb_002054_090--Hb_060236_010 Hb_002054_090--Hb_004241_050 Hb_002054_090--Hb_000059_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0292586 1.98486 0.35592 13.6471 0.0286627 0.0809496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0886508 0.296452 0.132332 5.11233 0.442454

CAGE analysis