Hb_128582_010

Information

Type -
Description -
Location Contig128582: 158-858
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08724: 67-342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128582_010 0.0 - - -
2 Hb_001821_030 0.1303766808 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
3 Hb_001115_010 0.1352050254 - - PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]
4 Hb_004875_040 0.1478174082 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
5 Hb_000098_210 0.1583676875 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
6 Hb_001369_530 0.162162237 - - 21 kDa protein precursor, putative [Ricinus communis]
7 Hb_000059_110 0.165759818 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
8 Hb_002054_090 0.1705184484 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
9 Hb_004241_050 0.1718587448 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
10 Hb_148817_010 0.1751011617 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
11 Hb_000032_330 0.1761020894 - - conserved hypothetical protein [Ricinus communis]
12 Hb_080068_010 0.1771269373 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
13 Hb_003371_040 0.1812306628 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
14 Hb_016120_020 0.1844755912 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]
15 Hb_041063_010 0.1851176754 - - Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_006314_020 0.1861966283 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
17 Hb_000521_350 0.1864247855 - - unnamed protein product [Vitis vinifera]
18 Hb_000429_030 0.186887353 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_001610_060 0.1887501138 - - hypothetical protein TRIUR3_12067 [Triticum urartu]
20 Hb_000720_060 0.1890613323 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_128582_010 Hb_128582_010 Hb_001821_030 Hb_001821_030 Hb_128582_010--Hb_001821_030 Hb_001115_010 Hb_001115_010 Hb_128582_010--Hb_001115_010 Hb_004875_040 Hb_004875_040 Hb_128582_010--Hb_004875_040 Hb_000098_210 Hb_000098_210 Hb_128582_010--Hb_000098_210 Hb_001369_530 Hb_001369_530 Hb_128582_010--Hb_001369_530 Hb_000059_110 Hb_000059_110 Hb_128582_010--Hb_000059_110 Hb_001821_030--Hb_001369_530 Hb_006314_020 Hb_006314_020 Hb_001821_030--Hb_006314_020 Hb_000521_350 Hb_000521_350 Hb_001821_030--Hb_000521_350 Hb_148817_010 Hb_148817_010 Hb_001821_030--Hb_148817_010 Hb_001821_030--Hb_004875_040 Hb_000081_030 Hb_000081_030 Hb_001821_030--Hb_000081_030 Hb_016120_020 Hb_016120_020 Hb_001115_010--Hb_016120_020 Hb_004241_050 Hb_004241_050 Hb_001115_010--Hb_004241_050 Hb_080068_010 Hb_080068_010 Hb_001115_010--Hb_080068_010 Hb_003504_010 Hb_003504_010 Hb_001115_010--Hb_003504_010 Hb_002054_090 Hb_002054_090 Hb_001115_010--Hb_002054_090 Hb_020805_110 Hb_020805_110 Hb_004875_040--Hb_020805_110 Hb_004875_040--Hb_148817_010 Hb_001856_150 Hb_001856_150 Hb_004875_040--Hb_001856_150 Hb_004875_040--Hb_000098_210 Hb_000676_380 Hb_000676_380 Hb_004875_040--Hb_000676_380 Hb_004875_040--Hb_006314_020 Hb_000032_330 Hb_000032_330 Hb_000098_210--Hb_000032_330 Hb_041063_010 Hb_041063_010 Hb_000098_210--Hb_041063_010 Hb_000098_210--Hb_148817_010 Hb_003171_070 Hb_003171_070 Hb_000098_210--Hb_003171_070 Hb_003371_040 Hb_003371_040 Hb_000098_210--Hb_003371_040 Hb_000270_550 Hb_000270_550 Hb_001369_530--Hb_000270_550 Hb_012395_150 Hb_012395_150 Hb_001369_530--Hb_012395_150 Hb_012879_010 Hb_012879_010 Hb_001369_530--Hb_012879_010 Hb_179118_010 Hb_179118_010 Hb_001369_530--Hb_179118_010 Hb_183820_010 Hb_183820_010 Hb_001369_530--Hb_183820_010 Hb_000059_110--Hb_000521_350 Hb_004724_010 Hb_004724_010 Hb_000059_110--Hb_004724_010 Hb_000059_110--Hb_004241_050 Hb_000146_100 Hb_000146_100 Hb_000059_110--Hb_000146_100 Hb_000658_020 Hb_000658_020 Hb_000059_110--Hb_000658_020 Hb_000059_110--Hb_041063_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22357 11.9507 0.878649 52.6357 1.11738 0.786443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.664046 0.261273 0.380785 28.4611 1.24357

CAGE analysis