Hb_004241_050

Information

Type -
Description -
Location Contig4241: 25776-28078
Sequence    

Annotation

kegg
ID rcu:RCOM_0032550
description Indole-3-acetic acid-amido synthetase GH3.6, putative
nr
ID XP_002533739.1
description Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
swissprot
ID Q9LSQ4
description Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1
trembl
ID B9T670
description Indole-3-acetic acid-amido synthetase GH3.6, putative OS=Ricinus communis GN=RCOM_0032550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004241_050 0.0 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
2 Hb_060236_010 0.0960888784 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
3 Hb_041063_010 0.1078333983 - - Disease resistance protein RFL1, putative [Ricinus communis]
4 Hb_000059_110 0.1124452477 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
5 Hb_001115_010 0.1231973062 - - PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]
6 Hb_082733_010 0.1238105808 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
7 Hb_000563_620 0.1275931547 - - hypothetical protein JCGZ_18889 [Jatropha curcas]
8 Hb_002054_090 0.1325181554 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
9 Hb_080068_010 0.1335833295 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
10 Hb_000098_210 0.1344763118 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
11 Hb_131417_010 0.1493789743 - - hypothetical protein POPTR_0011s066602g, partial [Populus trichocarpa]
12 Hb_007007_020 0.1554524861 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000959_150 0.1591016096 - - PREDICTED: uncharacterized protein LOC104879927 [Vitis vinifera]
14 Hb_000032_330 0.162038452 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006326_020 0.1628298383 - - -
16 Hb_003371_040 0.1634251905 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
17 Hb_000146_100 0.1640556342 - - conserved hypothetical protein [Ricinus communis]
18 Hb_016120_020 0.1650104756 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]
19 Hb_066207_020 0.1699078268 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
20 Hb_000429_030 0.1700519636 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004241_050 Hb_004241_050 Hb_060236_010 Hb_060236_010 Hb_004241_050--Hb_060236_010 Hb_041063_010 Hb_041063_010 Hb_004241_050--Hb_041063_010 Hb_000059_110 Hb_000059_110 Hb_004241_050--Hb_000059_110 Hb_001115_010 Hb_001115_010 Hb_004241_050--Hb_001115_010 Hb_082733_010 Hb_082733_010 Hb_004241_050--Hb_082733_010 Hb_000563_620 Hb_000563_620 Hb_004241_050--Hb_000563_620 Hb_060236_010--Hb_082733_010 Hb_060236_010--Hb_000563_620 Hb_060236_010--Hb_041063_010 Hb_007007_020 Hb_007007_020 Hb_060236_010--Hb_007007_020 Hb_002054_090 Hb_002054_090 Hb_060236_010--Hb_002054_090 Hb_000032_330 Hb_000032_330 Hb_041063_010--Hb_000032_330 Hb_000098_210 Hb_000098_210 Hb_041063_010--Hb_000098_210 Hb_041063_010--Hb_002054_090 Hb_131417_010 Hb_131417_010 Hb_041063_010--Hb_131417_010 Hb_000521_350 Hb_000521_350 Hb_000059_110--Hb_000521_350 Hb_004724_010 Hb_004724_010 Hb_000059_110--Hb_004724_010 Hb_000146_100 Hb_000146_100 Hb_000059_110--Hb_000146_100 Hb_000658_020 Hb_000658_020 Hb_000059_110--Hb_000658_020 Hb_000059_110--Hb_041063_010 Hb_016120_020 Hb_016120_020 Hb_001115_010--Hb_016120_020 Hb_128582_010 Hb_128582_010 Hb_001115_010--Hb_128582_010 Hb_080068_010 Hb_080068_010 Hb_001115_010--Hb_080068_010 Hb_003504_010 Hb_003504_010 Hb_001115_010--Hb_003504_010 Hb_001115_010--Hb_002054_090 Hb_082733_010--Hb_007007_020 Hb_002413_030 Hb_002413_030 Hb_082733_010--Hb_002413_030 Hb_059226_020 Hb_059226_020 Hb_082733_010--Hb_059226_020 Hb_082733_010--Hb_041063_010 Hb_001091_010 Hb_001091_010 Hb_082733_010--Hb_001091_010 Hb_006326_020 Hb_006326_020 Hb_000563_620--Hb_006326_020 Hb_000563_620--Hb_007007_020 Hb_000563_620--Hb_000146_100 Hb_000563_620--Hb_041063_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.655134 0.0772983 5.03545 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0231724 0 0 1.71953 0.0770094

CAGE analysis