Hb_131417_010

Information

Type -
Description -
Location Contig131417: 971-1283
Sequence    

Annotation

kegg
ID pop:POPTR_0011s066602
description hypothetical protein
nr
ID XP_006377522.1
description hypothetical protein POPTR_0011s066602g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FYV1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0011s066602g PE=4 SV=1
Gene Ontology
ID GO:0004674
description probable lrr receptor-like serine threonine-protein kinase at1g07650 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131417_010 0.0 - - hypothetical protein POPTR_0011s066602g, partial [Populus trichocarpa]
2 Hb_041063_010 0.1108249897 - - Disease resistance protein RFL1, putative [Ricinus communis]
3 Hb_000297_220 0.1182241164 - - SAUR family protein [Theobroma cacao]
4 Hb_002054_090 0.1362779418 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
5 Hb_000032_330 0.1369484747 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004631_030 0.1375924177 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
7 Hb_012516_030 0.1408395969 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
8 Hb_002413_030 0.1412629315 - - sulfate transporter, putative [Ricinus communis]
9 Hb_082733_010 0.1488641071 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
10 Hb_004241_050 0.1493789743 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
11 Hb_000956_060 0.1495033111 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
12 Hb_000098_210 0.1522760299 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
13 Hb_000429_030 0.1528165581 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_060236_010 0.1557459645 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
15 Hb_003811_050 0.1598357965 - - hypothetical protein JCGZ_01310 [Jatropha curcas]
16 Hb_081191_010 0.1617908505 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]
17 Hb_007007_020 0.1658997823 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000676_130 0.1683934449 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
19 Hb_003171_070 0.1698444762 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
20 Hb_020805_110 0.1714813676 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_131417_010 Hb_131417_010 Hb_041063_010 Hb_041063_010 Hb_131417_010--Hb_041063_010 Hb_000297_220 Hb_000297_220 Hb_131417_010--Hb_000297_220 Hb_002054_090 Hb_002054_090 Hb_131417_010--Hb_002054_090 Hb_000032_330 Hb_000032_330 Hb_131417_010--Hb_000032_330 Hb_004631_030 Hb_004631_030 Hb_131417_010--Hb_004631_030 Hb_012516_030 Hb_012516_030 Hb_131417_010--Hb_012516_030 Hb_041063_010--Hb_000032_330 Hb_060236_010 Hb_060236_010 Hb_041063_010--Hb_060236_010 Hb_000098_210 Hb_000098_210 Hb_041063_010--Hb_000098_210 Hb_004241_050 Hb_004241_050 Hb_041063_010--Hb_004241_050 Hb_041063_010--Hb_002054_090 Hb_000297_220--Hb_004631_030 Hb_000297_220--Hb_012516_030 Hb_000956_060 Hb_000956_060 Hb_000297_220--Hb_000956_060 Hb_000297_220--Hb_041063_010 Hb_000297_220--Hb_002054_090 Hb_000306_050 Hb_000306_050 Hb_000297_220--Hb_000306_050 Hb_002054_090--Hb_004631_030 Hb_002054_090--Hb_060236_010 Hb_002054_090--Hb_004241_050 Hb_000059_110 Hb_000059_110 Hb_002054_090--Hb_000059_110 Hb_000032_330--Hb_000098_210 Hb_148817_010 Hb_148817_010 Hb_000032_330--Hb_148817_010 Hb_095532_010 Hb_095532_010 Hb_000032_330--Hb_095532_010 Hb_004875_040 Hb_004875_040 Hb_000032_330--Hb_004875_040 Hb_020805_110 Hb_020805_110 Hb_000032_330--Hb_020805_110 Hb_004631_030--Hb_012516_030 Hb_000566_170 Hb_000566_170 Hb_004631_030--Hb_000566_170 Hb_004631_030--Hb_000956_060 Hb_000510_210 Hb_000510_210 Hb_004631_030--Hb_000510_210 Hb_012516_030--Hb_000956_060 Hb_012516_030--Hb_000566_170 Hb_012516_030--Hb_000510_210 Hb_000975_130 Hb_000975_130 Hb_012516_030--Hb_000975_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.36251 5.01312 70.5073 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09626 0 0 36.9818 0

CAGE analysis