Hb_001610_060

Information

Type -
Description -
Location Contig1610: 85853-86494
Sequence    

Annotation

kegg
ID atr:s00069p00178570
description AMTR_s00069p00178570; hypothetical protein
nr
ID EMS66701.1
description hypothetical protein TRIUR3_12067 [Triticum urartu]
swissprot
ID -
description -
trembl
ID W5C6T9
description Uncharacterized protein (Fragment) OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0004252
description xylem serine proteinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001610_060 0.0 - - hypothetical protein TRIUR3_12067 [Triticum urartu]
2 Hb_000203_150 0.0798226831 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
3 Hb_001013_060 0.1018128918 - - -
4 Hb_000720_060 0.1038242839 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
5 Hb_016120_020 0.1103488197 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]
6 Hb_000032_340 0.1216255411 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
7 Hb_000856_250 0.1276952169 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_000002_230 0.1389522382 - - RING/U-box superfamily protein [Theobroma cacao]
9 Hb_110854_010 0.1430552238 - - -
10 Hb_003504_010 0.1459508724 - - hypothetical protein POPTR_0013s04290g [Populus trichocarpa]
11 Hb_010417_090 0.1473106195 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
12 Hb_000069_630 0.1489113772 - - hypothetical protein [Hevea brasiliensis]
13 Hb_002374_060 0.1498053453 - - amino acid transporter, putative [Ricinus communis]
14 Hb_183209_020 0.154088143 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
15 Hb_012879_010 0.1581877924 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001775_060 0.1602794278 - - conserved hypothetical protein [Ricinus communis]
17 Hb_013691_040 0.1614916979 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
18 Hb_001821_030 0.1618670263 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
19 Hb_010162_010 0.1634233986 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
20 Hb_001369_530 0.1646640919 - - 21 kDa protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001610_060 Hb_001610_060 Hb_000203_150 Hb_000203_150 Hb_001610_060--Hb_000203_150 Hb_001013_060 Hb_001013_060 Hb_001610_060--Hb_001013_060 Hb_000720_060 Hb_000720_060 Hb_001610_060--Hb_000720_060 Hb_016120_020 Hb_016120_020 Hb_001610_060--Hb_016120_020 Hb_000032_340 Hb_000032_340 Hb_001610_060--Hb_000032_340 Hb_000856_250 Hb_000856_250 Hb_001610_060--Hb_000856_250 Hb_000203_150--Hb_001013_060 Hb_000002_230 Hb_000002_230 Hb_000203_150--Hb_000002_230 Hb_000203_150--Hb_000032_340 Hb_000203_150--Hb_000720_060 Hb_183209_020 Hb_183209_020 Hb_000203_150--Hb_183209_020 Hb_000840_220 Hb_000840_220 Hb_001013_060--Hb_000840_220 Hb_000563_570 Hb_000563_570 Hb_001013_060--Hb_000563_570 Hb_001013_060--Hb_000720_060 Hb_003582_010 Hb_003582_010 Hb_001013_060--Hb_003582_010 Hb_000069_630 Hb_000069_630 Hb_000720_060--Hb_000069_630 Hb_001775_060 Hb_001775_060 Hb_000720_060--Hb_001775_060 Hb_000720_060--Hb_016120_020 Hb_003504_010 Hb_003504_010 Hb_016120_020--Hb_003504_010 Hb_016120_020--Hb_000856_250 Hb_001115_010 Hb_001115_010 Hb_016120_020--Hb_001115_010 Hb_002374_060 Hb_002374_060 Hb_016120_020--Hb_002374_060 Hb_016120_020--Hb_000032_340 Hb_000032_340--Hb_000856_250 Hb_000069_520 Hb_000069_520 Hb_000032_340--Hb_000069_520 Hb_010417_090 Hb_010417_090 Hb_000032_340--Hb_010417_090 Hb_000032_340--Hb_183209_020 Hb_000070_070 Hb_000070_070 Hb_000856_250--Hb_000070_070 Hb_000856_250--Hb_010417_090 Hb_000856_250--Hb_000203_150 Hb_002236_010 Hb_002236_010 Hb_000856_250--Hb_002236_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 13.155 1.65015 32.4486 0.0741547 0.315989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0718808 0.380729 12.2462 2.10808

CAGE analysis