Hb_000480_050

Information

Type -
Description -
Location Contig480: 90695-90973
Sequence    

Annotation

kegg
ID pvu:PHAVU_004G154200g
description hypothetical protein
nr
ID XP_007152725.1
description hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
swissprot
ID Q43681
description Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1
trembl
ID F6GTP3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g03280 PE=4 SV=1
Gene Ontology
ID GO:0008233
description non-specific lipid-transfer protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44678: 90640-91230
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000480_050 0.0 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
2 Hb_004926_010 0.0720286097 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
3 Hb_159012_010 0.0812644112 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
4 Hb_002999_010 0.0839095841 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
5 Hb_007477_020 0.09025175 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
6 Hb_000194_030 0.0933986605 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
7 Hb_004031_060 0.1089866767 - - hypothetical protein B456_007G3219002, partial [Gossypium raimondii]
8 Hb_005373_030 0.1150317526 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001529_010 0.1190104558 - - -
10 Hb_016120_030 0.1198183244 - - hypothetical protein EUGRSUZ_D00080 [Eucalyptus grandis]
11 Hb_033153_030 0.1200372437 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
12 Hb_003058_090 0.1283446003 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
13 Hb_007426_100 0.1316916179 - - conserved hypothetical protein [Ricinus communis]
14 Hb_039946_040 0.1404335196 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
15 Hb_002874_100 0.1409262218 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000445_480 0.1469763664 - - cytochrome P450, putative [Ricinus communis]
17 Hb_004319_100 0.1474401708 - - PREDICTED: gibberellin-regulated protein 14 isoform X3 [Jatropha curcas]
18 Hb_060236_010 0.1508733415 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
19 Hb_001091_010 0.1559224694 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
20 Hb_005245_030 0.1564413825 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g07570 [Jatropha curcas]

Gene co-expression network

sample Hb_000480_050 Hb_000480_050 Hb_004926_010 Hb_004926_010 Hb_000480_050--Hb_004926_010 Hb_159012_010 Hb_159012_010 Hb_000480_050--Hb_159012_010 Hb_002999_010 Hb_002999_010 Hb_000480_050--Hb_002999_010 Hb_007477_020 Hb_007477_020 Hb_000480_050--Hb_007477_020 Hb_000194_030 Hb_000194_030 Hb_000480_050--Hb_000194_030 Hb_004031_060 Hb_004031_060 Hb_000480_050--Hb_004031_060 Hb_004926_010--Hb_000194_030 Hb_004926_010--Hb_159012_010 Hb_004926_010--Hb_004031_060 Hb_004926_010--Hb_002999_010 Hb_007426_100 Hb_007426_100 Hb_004926_010--Hb_007426_100 Hb_159012_010--Hb_000194_030 Hb_004319_100 Hb_004319_100 Hb_159012_010--Hb_004319_100 Hb_001529_010 Hb_001529_010 Hb_159012_010--Hb_001529_010 Hb_159012_010--Hb_007477_020 Hb_005373_030 Hb_005373_030 Hb_002999_010--Hb_005373_030 Hb_016120_030 Hb_016120_030 Hb_002999_010--Hb_016120_030 Hb_002999_010--Hb_007477_020 Hb_002999_010--Hb_004031_060 Hb_003058_090 Hb_003058_090 Hb_007477_020--Hb_003058_090 Hb_033153_030 Hb_033153_030 Hb_007477_020--Hb_033153_030 Hb_002874_100 Hb_002874_100 Hb_007477_020--Hb_002874_100 Hb_007477_020--Hb_005373_030 Hb_000194_030--Hb_004319_100 Hb_000194_030--Hb_007426_100 Hb_000194_030--Hb_001529_010 Hb_004031_060--Hb_016120_030 Hb_019053_050 Hb_019053_050 Hb_004031_060--Hb_019053_050 Hb_001091_040 Hb_001091_040 Hb_004031_060--Hb_001091_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82556 41.1671 19.5598 794.943 1.34594 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 92.4076 2.639

CAGE analysis