Hb_008536_030

Information

Type -
Description -
Location Contig8536: 27082-27300
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08290g
description POPTRDRAFT_558587; hypothetical protein
nr
ID XP_002307116.1
description hypothetical protein POPTR_0005s08290g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H580
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08290g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008536_030 0.0 - - hypothetical protein POPTR_0005s08290g [Populus trichocarpa]
2 Hb_003582_010 0.1546482463 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
3 Hb_000959_150 0.1654464592 - - PREDICTED: uncharacterized protein LOC104879927 [Vitis vinifera]
4 Hb_059226_020 0.1671811592 - - hypothetical protein B456_008G287700 [Gossypium raimondii]
5 Hb_022597_010 0.1698791167 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
6 Hb_080068_010 0.1723136138 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
7 Hb_002054_090 0.1725540965 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
8 Hb_000480_050 0.1758079341 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
9 Hb_002122_060 0.1762477494 - - PREDICTED: putative disease resistance protein RGA4 [Beta vulgaris subsp. vulgaris]
10 Hb_000616_100 0.1763904772 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
11 Hb_001322_010 0.1787579362 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
12 Hb_004330_060 0.1796304294 - - hypothetical protein POPTR_0011s01530g [Populus trichocarpa]
13 Hb_014096_010 0.1798367273 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_001775_060 0.1812335051 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004241_050 0.1838166883 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
16 Hb_060236_010 0.1840198715 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
17 Hb_066207_020 0.1845090112 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
18 Hb_000740_080 0.1864984885 - - -
19 Hb_001115_010 0.1875228505 - - PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]
20 Hb_002999_010 0.1892733543 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]

Gene co-expression network

sample Hb_008536_030 Hb_008536_030 Hb_003582_010 Hb_003582_010 Hb_008536_030--Hb_003582_010 Hb_000959_150 Hb_000959_150 Hb_008536_030--Hb_000959_150 Hb_059226_020 Hb_059226_020 Hb_008536_030--Hb_059226_020 Hb_022597_010 Hb_022597_010 Hb_008536_030--Hb_022597_010 Hb_080068_010 Hb_080068_010 Hb_008536_030--Hb_080068_010 Hb_002054_090 Hb_002054_090 Hb_008536_030--Hb_002054_090 Hb_008385_010 Hb_008385_010 Hb_003582_010--Hb_008385_010 Hb_001013_070 Hb_001013_070 Hb_003582_010--Hb_001013_070 Hb_002511_050 Hb_002511_050 Hb_003582_010--Hb_002511_050 Hb_000705_070 Hb_000705_070 Hb_003582_010--Hb_000705_070 Hb_001322_010 Hb_001322_010 Hb_003582_010--Hb_001322_010 Hb_001013_060 Hb_001013_060 Hb_003582_010--Hb_001013_060 Hb_014096_010 Hb_014096_010 Hb_000959_150--Hb_014096_010 Hb_140024_010 Hb_140024_010 Hb_000959_150--Hb_140024_010 Hb_010050_010 Hb_010050_010 Hb_000959_150--Hb_010050_010 Hb_000563_620 Hb_000563_620 Hb_000959_150--Hb_000563_620 Hb_004241_050 Hb_004241_050 Hb_000959_150--Hb_004241_050 Hb_004397_010 Hb_004397_010 Hb_059226_020--Hb_004397_010 Hb_039946_040 Hb_039946_040 Hb_059226_020--Hb_039946_040 Hb_082733_010 Hb_082733_010 Hb_059226_020--Hb_082733_010 Hb_066207_020 Hb_066207_020 Hb_059226_020--Hb_066207_020 Hb_030088_010 Hb_030088_010 Hb_059226_020--Hb_030088_010 Hb_004330_060 Hb_004330_060 Hb_059226_020--Hb_004330_060 Hb_022597_010--Hb_001322_010 Hb_000860_030 Hb_000860_030 Hb_022597_010--Hb_000860_030 Hb_000897_010 Hb_000897_010 Hb_022597_010--Hb_000897_010 Hb_000638_110 Hb_000638_110 Hb_022597_010--Hb_000638_110 Hb_005245_030 Hb_005245_030 Hb_022597_010--Hb_005245_030 Hb_005736_110 Hb_005736_110 Hb_022597_010--Hb_005736_110 Hb_113945_010 Hb_113945_010 Hb_080068_010--Hb_113945_010 Hb_007161_020 Hb_007161_020 Hb_080068_010--Hb_007161_020 Hb_080068_010--Hb_004241_050 Hb_016120_020 Hb_016120_020 Hb_080068_010--Hb_016120_020 Hb_003371_040 Hb_003371_040 Hb_080068_010--Hb_003371_040 Hb_000106_060 Hb_000106_060 Hb_080068_010--Hb_000106_060 Hb_004631_030 Hb_004631_030 Hb_002054_090--Hb_004631_030 Hb_041063_010 Hb_041063_010 Hb_002054_090--Hb_041063_010 Hb_000297_220 Hb_000297_220 Hb_002054_090--Hb_000297_220 Hb_060236_010 Hb_060236_010 Hb_002054_090--Hb_060236_010 Hb_002054_090--Hb_004241_050 Hb_000059_110 Hb_000059_110 Hb_002054_090--Hb_000059_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85226 5.84726 1.97666 46.9372 0.530373 0.56928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.75821 0.969039

CAGE analysis