Hb_004330_060

Information

Type -
Description -
Location Contig4330: 71030-88162
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01530g
description POPTRDRAFT_233491; hypothetical protein
nr
ID XP_002317148.2
description hypothetical protein POPTR_0011s01530g [Populus trichocarpa]
swissprot
ID Q99J39
description Malonyl-CoA decarboxylase, mitochondrial OS=Mus musculus GN=Mlycd PE=1 SV=1
trembl
ID B9HZA7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01530g PE=4 SV=2
Gene Ontology
ID GO:0050080
description malonyl- mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004330_060 0.0 - - hypothetical protein POPTR_0011s01530g [Populus trichocarpa]
2 Hb_059226_020 0.1315908799 - - hypothetical protein B456_008G287700 [Gossypium raimondii]
3 Hb_039946_040 0.1336740312 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
4 Hb_159012_010 0.1508190669 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
5 Hb_002003_100 0.1575388042 - - -
6 Hb_000480_050 0.1693893497 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
7 Hb_082733_010 0.1695234532 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
8 Hb_000194_030 0.1697294695 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
9 Hb_004926_010 0.1737157879 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
10 Hb_004319_100 0.175876869 - - PREDICTED: gibberellin-regulated protein 14 isoform X3 [Jatropha curcas]
11 Hb_000917_070 0.1792885421 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008536_030 0.1796304294 - - hypothetical protein POPTR_0005s08290g [Populus trichocarpa]
13 Hb_005144_140 0.1807405942 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007007_020 0.1822461817 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000042_350 0.1849311813 - - hypothetical protein JCGZ_00710 [Jatropha curcas]
16 Hb_060236_010 0.1877144286 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
17 Hb_001091_010 0.1906418845 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
18 Hb_006275_040 0.191127499 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
19 Hb_030088_010 0.1918064517 - - basic blue copper family protein [Populus trichocarpa]
20 Hb_005348_020 0.1940901859 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004330_060 Hb_004330_060 Hb_059226_020 Hb_059226_020 Hb_004330_060--Hb_059226_020 Hb_039946_040 Hb_039946_040 Hb_004330_060--Hb_039946_040 Hb_159012_010 Hb_159012_010 Hb_004330_060--Hb_159012_010 Hb_002003_100 Hb_002003_100 Hb_004330_060--Hb_002003_100 Hb_000480_050 Hb_000480_050 Hb_004330_060--Hb_000480_050 Hb_082733_010 Hb_082733_010 Hb_004330_060--Hb_082733_010 Hb_004397_010 Hb_004397_010 Hb_059226_020--Hb_004397_010 Hb_059226_020--Hb_039946_040 Hb_059226_020--Hb_082733_010 Hb_066207_020 Hb_066207_020 Hb_059226_020--Hb_066207_020 Hb_030088_010 Hb_030088_010 Hb_059226_020--Hb_030088_010 Hb_006351_040 Hb_006351_040 Hb_039946_040--Hb_006351_040 Hb_001091_040 Hb_001091_040 Hb_039946_040--Hb_001091_040 Hb_004319_100 Hb_004319_100 Hb_039946_040--Hb_004319_100 Hb_004926_010 Hb_004926_010 Hb_039946_040--Hb_004926_010 Hb_000194_030 Hb_000194_030 Hb_039946_040--Hb_000194_030 Hb_159012_010--Hb_000194_030 Hb_159012_010--Hb_004926_010 Hb_159012_010--Hb_000480_050 Hb_159012_010--Hb_004319_100 Hb_001529_010 Hb_001529_010 Hb_159012_010--Hb_001529_010 Hb_007477_020 Hb_007477_020 Hb_159012_010--Hb_007477_020 Hb_003988_020 Hb_003988_020 Hb_002003_100--Hb_003988_020 Hb_000042_350 Hb_000042_350 Hb_002003_100--Hb_000042_350 Hb_000935_060 Hb_000935_060 Hb_002003_100--Hb_000935_060 Hb_004102_150 Hb_004102_150 Hb_002003_100--Hb_004102_150 Hb_000926_240 Hb_000926_240 Hb_002003_100--Hb_000926_240 Hb_000480_050--Hb_004926_010 Hb_002999_010 Hb_002999_010 Hb_000480_050--Hb_002999_010 Hb_000480_050--Hb_007477_020 Hb_000480_050--Hb_000194_030 Hb_004031_060 Hb_004031_060 Hb_000480_050--Hb_004031_060 Hb_007007_020 Hb_007007_020 Hb_082733_010--Hb_007007_020 Hb_002413_030 Hb_002413_030 Hb_082733_010--Hb_002413_030 Hb_060236_010 Hb_060236_010 Hb_082733_010--Hb_060236_010 Hb_041063_010 Hb_041063_010 Hb_082733_010--Hb_041063_010 Hb_001091_010 Hb_001091_010 Hb_082733_010--Hb_001091_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0292946 0.019502 0.04383 0.597805 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.12623 0

CAGE analysis