Hb_003988_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig3988: 16824-18395
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09210g
description POPTRDRAFT_767688; basic helix-loop-helix family protein
nr
ID XP_011030345.1
description PREDICTED: transcription factor bHLH85-like [Populus euphratica]
swissprot
ID Q84WK0
description Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2 SV=1
trembl
ID B9HMZ0
description Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0009s09210g PE=4 SV=2
Gene Ontology
ID GO:0046983
description transcription factor bhlh85-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003988_020 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
2 Hb_000042_350 0.1186391694 - - hypothetical protein JCGZ_00710 [Jatropha curcas]
3 Hb_002003_100 0.1279750717 - - -
4 Hb_001396_270 0.1597239456 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
5 Hb_000164_210 0.160585412 - - glutaredoxin-1, grx1, putative [Ricinus communis]
6 Hb_034858_010 0.1861861873 - - -
7 Hb_000042_120 0.1896953858 - - PREDICTED: uncharacterized protein LOC105632800 [Jatropha curcas]
8 Hb_004317_020 0.1901798632 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
9 Hb_000566_060 0.1923651965 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000740_140 0.1939825144 transcription factor TF Family: OFP PREDICTED: probable transcription repressor OFP9 [Jatropha curcas]
11 Hb_004330_060 0.1969321324 - - hypothetical protein POPTR_0011s01530g [Populus trichocarpa]
12 Hb_005348_020 0.1993974465 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000926_240 0.2033785897 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
14 Hb_006012_030 0.2048019324 - - hypothetical protein POPTR_0008s02380g [Populus trichocarpa]
15 Hb_010068_010 0.2065819226 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
16 Hb_000269_050 0.2162803128 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
17 Hb_160479_010 0.216543943 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
18 Hb_000622_140 0.2175517891 - - conserved hypothetical protein [Ricinus communis]
19 Hb_093084_040 0.2175759281 transcription factor TF Family: LOB hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
20 Hb_051900_020 0.2212472106 - - JHL22C18.7 [Jatropha curcas]

Gene co-expression network

sample Hb_003988_020 Hb_003988_020 Hb_000042_350 Hb_000042_350 Hb_003988_020--Hb_000042_350 Hb_002003_100 Hb_002003_100 Hb_003988_020--Hb_002003_100 Hb_001396_270 Hb_001396_270 Hb_003988_020--Hb_001396_270 Hb_000164_210 Hb_000164_210 Hb_003988_020--Hb_000164_210 Hb_034858_010 Hb_034858_010 Hb_003988_020--Hb_034858_010 Hb_000042_120 Hb_000042_120 Hb_003988_020--Hb_000042_120 Hb_000042_350--Hb_002003_100 Hb_004330_060 Hb_004330_060 Hb_000042_350--Hb_004330_060 Hb_000042_350--Hb_001396_270 Hb_039946_040 Hb_039946_040 Hb_000042_350--Hb_039946_040 Hb_000042_350--Hb_000164_210 Hb_002003_100--Hb_004330_060 Hb_000935_060 Hb_000935_060 Hb_002003_100--Hb_000935_060 Hb_004102_150 Hb_004102_150 Hb_002003_100--Hb_004102_150 Hb_000926_240 Hb_000926_240 Hb_002003_100--Hb_000926_240 Hb_006012_030 Hb_006012_030 Hb_001396_270--Hb_006012_030 Hb_005914_220 Hb_005914_220 Hb_001396_270--Hb_005914_220 Hb_001396_270--Hb_000042_120 Hb_002374_540 Hb_002374_540 Hb_001396_270--Hb_002374_540 Hb_000270_590 Hb_000270_590 Hb_001396_270--Hb_000270_590 Hb_000579_160 Hb_000579_160 Hb_000164_210--Hb_000579_160 Hb_109187_010 Hb_109187_010 Hb_000164_210--Hb_109187_010 Hb_041188_010 Hb_041188_010 Hb_000164_210--Hb_041188_010 Hb_025526_110 Hb_025526_110 Hb_000164_210--Hb_025526_110 Hb_000589_080 Hb_000589_080 Hb_000164_210--Hb_000589_080 Hb_004317_020 Hb_004317_020 Hb_034858_010--Hb_004317_020 Hb_000566_060 Hb_000566_060 Hb_034858_010--Hb_000566_060 Hb_000740_140 Hb_000740_140 Hb_034858_010--Hb_000740_140 Hb_005348_020 Hb_005348_020 Hb_034858_010--Hb_005348_020 Hb_034858_010--Hb_000926_240 Hb_010068_010 Hb_010068_010 Hb_034858_010--Hb_010068_010 Hb_001347_020 Hb_001347_020 Hb_000042_120--Hb_001347_020 Hb_000422_100 Hb_000422_100 Hb_000042_120--Hb_000422_100 Hb_111442_010 Hb_111442_010 Hb_000042_120--Hb_111442_010 Hb_130357_010 Hb_130357_010 Hb_000042_120--Hb_130357_010 Hb_003729_040 Hb_003729_040 Hb_000042_120--Hb_003729_040 Hb_000628_090 Hb_000628_090 Hb_000042_120--Hb_000628_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0212894 0 0.0159341 0.263843 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0154028 0

CAGE analysis