Hb_000164_210

Information

Type -
Description -
Location Contig164: 214281-214715
Sequence    

Annotation

kegg
ID rcu:RCOM_1510350
description glutaredoxin-1, grx1, putative
nr
ID XP_002511377.1
description glutaredoxin-1, grx1, putative [Ricinus communis]
swissprot
ID Q8L8T2
description Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2
trembl
ID B9RB02
description Glutaredoxin-1, grx1, putative OS=Ricinus communis GN=RCOM_1510350 PE=4 SV=1
Gene Ontology
ID GO:0009055
description glutaredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000164_210 0.0 - - glutaredoxin-1, grx1, putative [Ricinus communis]
2 Hb_003988_020 0.160585412 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
3 Hb_000579_160 0.173538088 - - PREDICTED: uncharacterized protein LOC104216549 isoform X1 [Nicotiana sylvestris]
4 Hb_109187_010 0.1753327636 - - PREDICTED: serine/threonine-protein kinase CDL1 [Cucumis sativus]
5 Hb_041188_010 0.1882195949 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
6 Hb_025526_110 0.1883031923 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
7 Hb_000589_080 0.1886406062 - - hypothetical protein CICLE_v10032537mg [Citrus clementina]
8 Hb_020712_020 0.1887987043 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
9 Hb_000355_020 0.1897387185 - - -
10 Hb_001278_010 0.1900489335 - - conserved hypothetical protein [Ricinus communis]
11 Hb_031546_010 0.1933947473 - - hypothetical protein JCGZ_21533 [Jatropha curcas]
12 Hb_154146_010 0.1938609162 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
13 Hb_003050_240 0.1944343195 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001304_150 0.1945461423 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_092416_020 0.1962359633 - - protein with unknown function [Ricinus communis]
16 Hb_001946_420 0.1972473196 - - protein with unknown function [Ricinus communis]
17 Hb_000313_240 0.1978338638 - - hypothetical protein RCOM_0377590 [Ricinus communis]
18 Hb_012090_010 0.1979935619 - - hypothetical protein RCOM_0904330 [Ricinus communis]
19 Hb_000331_600 0.19886474 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
20 Hb_002092_050 0.1997293742 - - hypothetical protein JCGZ_05877 [Jatropha curcas]

Gene co-expression network

sample Hb_000164_210 Hb_000164_210 Hb_003988_020 Hb_003988_020 Hb_000164_210--Hb_003988_020 Hb_000579_160 Hb_000579_160 Hb_000164_210--Hb_000579_160 Hb_109187_010 Hb_109187_010 Hb_000164_210--Hb_109187_010 Hb_041188_010 Hb_041188_010 Hb_000164_210--Hb_041188_010 Hb_025526_110 Hb_025526_110 Hb_000164_210--Hb_025526_110 Hb_000589_080 Hb_000589_080 Hb_000164_210--Hb_000589_080 Hb_000042_350 Hb_000042_350 Hb_003988_020--Hb_000042_350 Hb_002003_100 Hb_002003_100 Hb_003988_020--Hb_002003_100 Hb_001396_270 Hb_001396_270 Hb_003988_020--Hb_001396_270 Hb_034858_010 Hb_034858_010 Hb_003988_020--Hb_034858_010 Hb_000042_120 Hb_000042_120 Hb_003988_020--Hb_000042_120 Hb_000579_160--Hb_109187_010 Hb_003050_240 Hb_003050_240 Hb_000579_160--Hb_003050_240 Hb_000579_160--Hb_000589_080 Hb_003906_040 Hb_003906_040 Hb_000579_160--Hb_003906_040 Hb_036693_020 Hb_036693_020 Hb_000579_160--Hb_036693_020 Hb_178343_010 Hb_178343_010 Hb_000579_160--Hb_178343_010 Hb_109187_010--Hb_000589_080 Hb_109187_010--Hb_003050_240 Hb_109187_010--Hb_003906_040 Hb_109187_010--Hb_178343_010 Hb_003092_010 Hb_003092_010 Hb_109187_010--Hb_003092_010 Hb_041188_010--Hb_025526_110 Hb_020712_020 Hb_020712_020 Hb_041188_010--Hb_020712_020 Hb_000355_020 Hb_000355_020 Hb_041188_010--Hb_000355_020 Hb_001278_010 Hb_001278_010 Hb_041188_010--Hb_001278_010 Hb_154146_010 Hb_154146_010 Hb_041188_010--Hb_154146_010 Hb_001304_150 Hb_001304_150 Hb_041188_010--Hb_001304_150 Hb_025526_110--Hb_020712_020 Hb_025526_110--Hb_000355_020 Hb_025526_110--Hb_001278_010 Hb_025526_110--Hb_154146_010 Hb_025526_110--Hb_001304_150 Hb_000589_080--Hb_003092_010 Hb_000002_190 Hb_000002_190 Hb_000589_080--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_000589_080--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_000589_080--Hb_000005_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.283069 0 0 3.58004 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.236276 0

CAGE analysis