Hb_036693_020

Information

Type -
Description -
Location Contig36693: 1633-2264
Sequence    

Annotation

kegg
ID rcu:RCOM_0906780
description DNA binding protein, putative
nr
ID XP_012092393.1
description PREDICTED: transcription factor DYT1 [Jatropha curcas]
swissprot
ID O81900
description Transcription factor DYT1 OS=Arabidopsis thaliana GN=DYT1 PE=2 SV=1
trembl
ID B9RXW8
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0906780 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor dysfunctional tapetum 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036693_020 0.0 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
2 Hb_003050_240 0.0992859532 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003902_080 0.1346041426 - - PREDICTED: senescence-specific cysteine protease SAG39-like [Populus euphratica]
4 Hb_000579_160 0.1649537688 - - PREDICTED: uncharacterized protein LOC104216549 isoform X1 [Nicotiana sylvestris]
5 Hb_063907_010 0.1746867379 - - -
6 Hb_001341_140 0.2070148024 - - -
7 Hb_109187_010 0.2248234338 - - PREDICTED: serine/threonine-protein kinase CDL1 [Cucumis sativus]
8 Hb_009193_080 0.2404394711 - - -
9 Hb_000164_210 0.253892425 - - glutaredoxin-1, grx1, putative [Ricinus communis]
10 Hb_000589_080 0.2635468523 - - hypothetical protein CICLE_v10032537mg [Citrus clementina]
11 Hb_003906_040 0.2771118745 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like [Tarenaya hassleriana]
12 Hb_003988_020 0.2910571026 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
13 Hb_178343_010 0.2968480349 - - PREDICTED: two-component response regulator ARR17-like [Jatropha curcas]
14 Hb_001369_680 0.3104765969 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
15 Hb_001396_270 0.3139576281 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
16 Hb_000236_170 0.3150608441 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
17 Hb_001741_110 0.315209691 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
18 Hb_002374_540 0.3157659837 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
19 Hb_006663_110 0.3168152922 - - PREDICTED: U-box domain-containing protein 34-like [Camelina sativa]
20 Hb_012640_010 0.3192091484 - - -

Gene co-expression network

sample Hb_036693_020 Hb_036693_020 Hb_003050_240 Hb_003050_240 Hb_036693_020--Hb_003050_240 Hb_003902_080 Hb_003902_080 Hb_036693_020--Hb_003902_080 Hb_000579_160 Hb_000579_160 Hb_036693_020--Hb_000579_160 Hb_063907_010 Hb_063907_010 Hb_036693_020--Hb_063907_010 Hb_001341_140 Hb_001341_140 Hb_036693_020--Hb_001341_140 Hb_109187_010 Hb_109187_010 Hb_036693_020--Hb_109187_010 Hb_003050_240--Hb_000579_160 Hb_003050_240--Hb_109187_010 Hb_000589_080 Hb_000589_080 Hb_003050_240--Hb_000589_080 Hb_003050_240--Hb_063907_010 Hb_000164_210 Hb_000164_210 Hb_003050_240--Hb_000164_210 Hb_009193_080 Hb_009193_080 Hb_003902_080--Hb_009193_080 Hb_119960_010 Hb_119960_010 Hb_003902_080--Hb_119960_010 Hb_003902_080--Hb_003050_240 Hb_032907_010 Hb_032907_010 Hb_003902_080--Hb_032907_010 Hb_003902_080--Hb_063907_010 Hb_000579_160--Hb_109187_010 Hb_000579_160--Hb_000589_080 Hb_003906_040 Hb_003906_040 Hb_000579_160--Hb_003906_040 Hb_178343_010 Hb_178343_010 Hb_000579_160--Hb_178343_010 Hb_063907_010--Hb_000579_160 Hb_011381_090 Hb_011381_090 Hb_063907_010--Hb_011381_090 Hb_063907_010--Hb_109187_010 Hb_001341_140--Hb_003050_240 Hb_001894_080 Hb_001894_080 Hb_001341_140--Hb_001894_080 Hb_001341_140--Hb_000579_160 Hb_000236_170 Hb_000236_170 Hb_001341_140--Hb_000236_170 Hb_001341_140--Hb_003902_080 Hb_109187_010--Hb_000589_080 Hb_109187_010--Hb_003906_040 Hb_109187_010--Hb_178343_010 Hb_003092_010 Hb_003092_010 Hb_109187_010--Hb_003092_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0759259 0 0 0.252828 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis