Hb_119960_010

Information

Type -
Description -
Location Contig119960: 185-892
Sequence    

Annotation

kegg
ID pop:POPTR_0003s01580g
description POPTRDRAFT_553456; hypothetical protein
nr
ID XP_011046142.1
description PREDICTED: pectinesterase-like [Populus euphratica]
swissprot
ID Q9SMY6
description Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1
trembl
ID B9GZR0
description Pectinesterase OS=Populus trichocarpa GN=POPTR_0003s01580g PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119960_010 0.0 - - PREDICTED: pectinesterase-like [Populus euphratica]
2 Hb_006620_080 0.0765408612 - - hypothetical protein JCGZ_12043 [Jatropha curcas]
3 Hb_011364_030 0.086103291 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
4 Hb_009193_080 0.0983986415 - - -
5 Hb_003902_080 0.2048738244 - - PREDICTED: senescence-specific cysteine protease SAG39-like [Populus euphratica]
6 Hb_032907_010 0.2057327829 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
7 Hb_000116_600 0.2838066753 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
8 Hb_123560_030 0.3253634931 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_036693_020 0.3360122366 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
10 Hb_001007_080 0.3371343617 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
11 Hb_000794_040 0.3386688911 - - PREDICTED: RING-H2 finger protein ATL29-like [Jatropha curcas]
12 Hb_000964_100 0.3495295702 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
13 Hb_101705_020 0.3530389116 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000184_140 0.3751550693 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001077_020 0.3803894827 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
16 Hb_004449_230 0.3917659339 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_006502_100 0.3922600004 - - hypothetical protein POPTR_0003s01580g [Populus trichocarpa]
18 Hb_001001_050 0.3990220318 - - CXE protein [Hevea brasiliensis]
19 Hb_063907_010 0.4023719995 - - -
20 Hb_000472_010 0.4071012939 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_119960_010 Hb_119960_010 Hb_006620_080 Hb_006620_080 Hb_119960_010--Hb_006620_080 Hb_011364_030 Hb_011364_030 Hb_119960_010--Hb_011364_030 Hb_009193_080 Hb_009193_080 Hb_119960_010--Hb_009193_080 Hb_003902_080 Hb_003902_080 Hb_119960_010--Hb_003902_080 Hb_032907_010 Hb_032907_010 Hb_119960_010--Hb_032907_010 Hb_000116_600 Hb_000116_600 Hb_119960_010--Hb_000116_600 Hb_006620_080--Hb_011364_030 Hb_006620_080--Hb_009193_080 Hb_006620_080--Hb_032907_010 Hb_006620_080--Hb_003902_080 Hb_006620_080--Hb_000116_600 Hb_011364_030--Hb_009193_080 Hb_011364_030--Hb_032907_010 Hb_011364_030--Hb_003902_080 Hb_011364_030--Hb_000116_600 Hb_009193_080--Hb_003902_080 Hb_009193_080--Hb_032907_010 Hb_036693_020 Hb_036693_020 Hb_009193_080--Hb_036693_020 Hb_003902_080--Hb_036693_020 Hb_003050_240 Hb_003050_240 Hb_003902_080--Hb_003050_240 Hb_003902_080--Hb_032907_010 Hb_063907_010 Hb_063907_010 Hb_003902_080--Hb_063907_010 Hb_032907_010--Hb_000116_600 Hb_000116_600--Hb_009193_080 Hb_004242_070 Hb_004242_070 Hb_000116_600--Hb_004242_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103493 0 0 0.0644623 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis