Hb_000116_600

Information

Type -
Description -
Location Contig116: 524543-529188
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_600 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_032907_010 0.126212467 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
3 Hb_119960_010 0.2838066753 - - PREDICTED: pectinesterase-like [Populus euphratica]
4 Hb_006620_080 0.2908604894 - - hypothetical protein JCGZ_12043 [Jatropha curcas]
5 Hb_011364_030 0.2930280867 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
6 Hb_009193_080 0.3018748959 - - -
7 Hb_004242_070 0.3365340565 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
8 Hb_005542_100 0.3374814358 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0013s03910g [Populus trichocarpa]
9 Hb_003902_080 0.3501123193 - - PREDICTED: senescence-specific cysteine protease SAG39-like [Populus euphratica]
10 Hb_101376_010 0.3575742948 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002400_370 0.3640735438 - - PREDICTED: uncharacterized protein LOC105637607 [Jatropha curcas]
12 Hb_017469_090 0.381371799 - - Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic, putative [Theobroma cacao]
13 Hb_001948_010 0.384131331 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
14 Hb_001195_240 0.3880838704 transcription factor TF Family: MYB-related PREDICTED: protein RADIALIS-like 3 [Jatropha curcas]
15 Hb_123560_030 0.4175492013 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_000964_100 0.4232365818 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
17 Hb_001007_080 0.4240428641 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
18 Hb_000624_020 0.4247270427 transcription factor TF Family: NAC NAC transcription factor 004 [Jatropha curcas]
19 Hb_001488_050 0.4260567323 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
20 Hb_000794_040 0.4279194697 - - PREDICTED: RING-H2 finger protein ATL29-like [Jatropha curcas]

Gene co-expression network

sample Hb_000116_600 Hb_000116_600 Hb_032907_010 Hb_032907_010 Hb_000116_600--Hb_032907_010 Hb_119960_010 Hb_119960_010 Hb_000116_600--Hb_119960_010 Hb_006620_080 Hb_006620_080 Hb_000116_600--Hb_006620_080 Hb_011364_030 Hb_011364_030 Hb_000116_600--Hb_011364_030 Hb_009193_080 Hb_009193_080 Hb_000116_600--Hb_009193_080 Hb_004242_070 Hb_004242_070 Hb_000116_600--Hb_004242_070 Hb_032907_010--Hb_009193_080 Hb_032907_010--Hb_119960_010 Hb_003902_080 Hb_003902_080 Hb_032907_010--Hb_003902_080 Hb_032907_010--Hb_006620_080 Hb_032907_010--Hb_011364_030 Hb_119960_010--Hb_006620_080 Hb_119960_010--Hb_011364_030 Hb_119960_010--Hb_009193_080 Hb_119960_010--Hb_003902_080 Hb_006620_080--Hb_011364_030 Hb_006620_080--Hb_009193_080 Hb_006620_080--Hb_003902_080 Hb_011364_030--Hb_009193_080 Hb_011364_030--Hb_003902_080 Hb_009193_080--Hb_003902_080 Hb_036693_020 Hb_036693_020 Hb_009193_080--Hb_036693_020 Hb_083493_020 Hb_083493_020 Hb_004242_070--Hb_083493_020 Hb_002400_370 Hb_002400_370 Hb_004242_070--Hb_002400_370 Hb_002498_210 Hb_002498_210 Hb_004242_070--Hb_002498_210 Hb_116360_010 Hb_116360_010 Hb_004242_070--Hb_116360_010 Hb_157263_010 Hb_157263_010 Hb_004242_070--Hb_157263_010 Hb_001103_040 Hb_001103_040 Hb_004242_070--Hb_001103_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0117326 0 0 0.00697903 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00335163 0

CAGE analysis