Hb_157263_010

Information

Type -
Description -
Location Contig157263: 2127-3445
Sequence    

Annotation

kegg
ID rcu:RCOM_0308380
description Jasmonate O-methyltransferase, putative (EC:2.1.1.141)
nr
ID XP_012081489.1
description PREDICTED: monomethylxanthine methyltransferase 2-like isoform X4 [Jatropha curcas]
swissprot
ID Q9AVL9
description Probable caffeine synthase 4 OS=Coffea arabica GN=CS4 PE=2 SV=1
trembl
ID A0A067K1C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18506 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable caffeine synthase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13728: 2166-2842 , PASA_asmbl_13729: 2874-3448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_157263_010 0.0 - - PREDICTED: monomethylxanthine methyltransferase 2-like isoform X4 [Jatropha curcas]
2 Hb_010175_060 0.166683576 - - conserved hypothetical protein [Ricinus communis]
3 Hb_050241_010 0.1995651311 - - PREDICTED: uncharacterized protein LOC105129233 isoform X1 [Populus euphratica]
4 Hb_006588_030 0.210169944 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
5 Hb_000189_490 0.2165236631 - - Sulfate/thiosulfate import ATP-binding protein cysA [Theobroma cacao]
6 Hb_001493_170 0.2212718116 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
7 Hb_004122_030 0.2213331369 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
8 Hb_022181_010 0.2214667317 - - PREDICTED: peroxidase 19 [Jatropha curcas]
9 Hb_001640_020 0.2257086942 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
10 Hb_048476_010 0.2262126689 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Citrus sinensis]
11 Hb_083493_020 0.2264962462 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]
12 Hb_000487_140 0.2291678418 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
13 Hb_003058_180 0.2306473195 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
14 Hb_000761_030 0.2315503106 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
15 Hb_000230_160 0.2371987256 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
16 Hb_002072_020 0.2419110999 - - hypothetical protein JCGZ_16057 [Jatropha curcas]
17 Hb_003805_080 0.2428637553 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
18 Hb_001103_040 0.2437386812 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
19 Hb_028008_030 0.2440277545 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
20 Hb_003442_010 0.2448260479 - - PREDICTED: structural maintenance of chromosomes protein 4-like isoform X2 [Citrus sinensis]

Gene co-expression network

sample Hb_157263_010 Hb_157263_010 Hb_010175_060 Hb_010175_060 Hb_157263_010--Hb_010175_060 Hb_050241_010 Hb_050241_010 Hb_157263_010--Hb_050241_010 Hb_006588_030 Hb_006588_030 Hb_157263_010--Hb_006588_030 Hb_000189_490 Hb_000189_490 Hb_157263_010--Hb_000189_490 Hb_001493_170 Hb_001493_170 Hb_157263_010--Hb_001493_170 Hb_004122_030 Hb_004122_030 Hb_157263_010--Hb_004122_030 Hb_000487_140 Hb_000487_140 Hb_010175_060--Hb_000487_140 Hb_001158_080 Hb_001158_080 Hb_010175_060--Hb_001158_080 Hb_010175_060--Hb_050241_010 Hb_003805_080 Hb_003805_080 Hb_010175_060--Hb_003805_080 Hb_002072_020 Hb_002072_020 Hb_010175_060--Hb_002072_020 Hb_008140_060 Hb_008140_060 Hb_050241_010--Hb_008140_060 Hb_050241_010--Hb_001158_080 Hb_000844_100 Hb_000844_100 Hb_050241_010--Hb_000844_100 Hb_000934_290 Hb_000934_290 Hb_050241_010--Hb_000934_290 Hb_002551_090 Hb_002551_090 Hb_050241_010--Hb_002551_090 Hb_003788_010 Hb_003788_010 Hb_050241_010--Hb_003788_010 Hb_000958_030 Hb_000958_030 Hb_006588_030--Hb_000958_030 Hb_006588_030--Hb_002072_020 Hb_048476_010 Hb_048476_010 Hb_006588_030--Hb_048476_010 Hb_000003_510 Hb_000003_510 Hb_006588_030--Hb_000003_510 Hb_000083_130 Hb_000083_130 Hb_006588_030--Hb_000083_130 Hb_031954_010 Hb_031954_010 Hb_000189_490--Hb_031954_010 Hb_001103_040 Hb_001103_040 Hb_000189_490--Hb_001103_040 Hb_003442_010 Hb_003442_010 Hb_000189_490--Hb_003442_010 Hb_004341_010 Hb_004341_010 Hb_000189_490--Hb_004341_010 Hb_001283_010 Hb_001283_010 Hb_000189_490--Hb_001283_010 Hb_000365_290 Hb_000365_290 Hb_000189_490--Hb_000365_290 Hb_003967_010 Hb_003967_010 Hb_001493_170--Hb_003967_010 Hb_028008_030 Hb_028008_030 Hb_001493_170--Hb_028008_030 Hb_000761_030 Hb_000761_030 Hb_001493_170--Hb_000761_030 Hb_000230_160 Hb_000230_160 Hb_001493_170--Hb_000230_160 Hb_008001_020 Hb_008001_020 Hb_001493_170--Hb_008001_020 Hb_000081_030 Hb_000081_030 Hb_001493_170--Hb_000081_030 Hb_002042_200 Hb_002042_200 Hb_004122_030--Hb_002042_200 Hb_000099_020 Hb_000099_020 Hb_004122_030--Hb_000099_020 Hb_027634_010 Hb_027634_010 Hb_004122_030--Hb_027634_010 Hb_001959_030 Hb_001959_030 Hb_004122_030--Hb_001959_030 Hb_001369_620 Hb_001369_620 Hb_004122_030--Hb_001369_620 Hb_005237_070 Hb_005237_070 Hb_004122_030--Hb_005237_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.40097 9.63182 0.248809 13.8781 0.0178783 0.384275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0436146 0 0 23.9265 1.41502

CAGE analysis