Hb_050241_010

Information

Type -
Description -
Location Contig50241: 510-1045
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11720g
description POPTRDRAFT_771794; hypothetical protein
nr
ID XP_011029506.1
description PREDICTED: uncharacterized protein LOC105129233 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HZS1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s11720g PE=4 SV=2
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase wnk-related isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050241_010 0.0 - - PREDICTED: uncharacterized protein LOC105129233 isoform X1 [Populus euphratica]
2 Hb_008140_060 0.1173584144 - - Cytochrome P450, putative [Theobroma cacao]
3 Hb_001158_080 0.1266329829 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
4 Hb_000844_100 0.1304539945 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
5 Hb_000934_290 0.1384296855 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002551_090 0.141485576 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
7 Hb_003788_010 0.1487471797 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
8 Hb_094637_010 0.1514095458 - - PREDICTED: uncharacterized protein LOC105642042 [Jatropha curcas]
9 Hb_002490_090 0.1535418128 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
10 Hb_184942_010 0.1547724919 - - STS14 protein precursor, putative [Ricinus communis]
11 Hb_001963_020 0.1592348103 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
12 Hb_172633_020 0.1595407325 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
13 Hb_039496_010 0.1601746977 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
14 Hb_002042_160 0.16039891 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_000963_010 0.161697048 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
16 Hb_000020_030 0.1619887612 - - protein binding protein, putative [Ricinus communis]
17 Hb_010175_060 0.1668040454 - - conserved hypothetical protein [Ricinus communis]
18 Hb_150084_010 0.1668651005 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
19 Hb_055529_010 0.1675604236 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
20 Hb_003787_060 0.1675981136 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_050241_010 Hb_050241_010 Hb_008140_060 Hb_008140_060 Hb_050241_010--Hb_008140_060 Hb_001158_080 Hb_001158_080 Hb_050241_010--Hb_001158_080 Hb_000844_100 Hb_000844_100 Hb_050241_010--Hb_000844_100 Hb_000934_290 Hb_000934_290 Hb_050241_010--Hb_000934_290 Hb_002551_090 Hb_002551_090 Hb_050241_010--Hb_002551_090 Hb_003788_010 Hb_003788_010 Hb_050241_010--Hb_003788_010 Hb_094637_010 Hb_094637_010 Hb_008140_060--Hb_094637_010 Hb_008140_060--Hb_000934_290 Hb_008140_060--Hb_000844_100 Hb_008140_060--Hb_001158_080 Hb_088916_010 Hb_088916_010 Hb_008140_060--Hb_088916_010 Hb_008140_060--Hb_002551_090 Hb_001158_080--Hb_000934_290 Hb_001158_080--Hb_002551_090 Hb_184942_010 Hb_184942_010 Hb_001158_080--Hb_184942_010 Hb_009642_010 Hb_009642_010 Hb_001158_080--Hb_009642_010 Hb_003787_060 Hb_003787_060 Hb_001158_080--Hb_003787_060 Hb_000740_130 Hb_000740_130 Hb_000844_100--Hb_000740_130 Hb_182021_010 Hb_182021_010 Hb_000844_100--Hb_182021_010 Hb_000844_100--Hb_001158_080 Hb_002173_060 Hb_002173_060 Hb_000844_100--Hb_002173_060 Hb_000844_100--Hb_094637_010 Hb_000934_290--Hb_003788_010 Hb_039496_010 Hb_039496_010 Hb_000934_290--Hb_039496_010 Hb_000934_290--Hb_003787_060 Hb_000934_290--Hb_094637_010 Hb_012807_060 Hb_012807_060 Hb_002551_090--Hb_012807_060 Hb_002551_090--Hb_000934_290 Hb_003052_120 Hb_003052_120 Hb_002551_090--Hb_003052_120 Hb_022501_020 Hb_022501_020 Hb_002551_090--Hb_022501_020 Hb_130967_010 Hb_130967_010 Hb_003788_010--Hb_130967_010 Hb_003788_010--Hb_039496_010 Hb_000335_050 Hb_000335_050 Hb_003788_010--Hb_000335_050 Hb_009581_050 Hb_009581_050 Hb_003788_010--Hb_009581_050 Hb_003788_010--Hb_012807_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175987 1.19602 0.165719 1.2649 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.29107 0.494049

CAGE analysis