Hb_003442_010

Information

Type -
Description -
Location Contig3442: 5939-6816
Sequence    

Annotation

kegg
ID cic:CICLE_v10016798mg
description hypothetical protein
nr
ID XP_006467929.1
description PREDICTED: structural maintenance of chromosomes protein 4-like isoform X2 [Citrus sinensis]
swissprot
ID Q9LJB7
description B-box zinc finger protein 32 OS=Arabidopsis thaliana GN=BBX32 PE=1 SV=1
trembl
ID A0A067G7X8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029117mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003442_010 0.0 - - PREDICTED: structural maintenance of chromosomes protein 4-like isoform X2 [Citrus sinensis]
2 Hb_000189_490 0.1442675138 - - Sulfate/thiosulfate import ATP-binding protein cysA [Theobroma cacao]
3 Hb_001481_020 0.1672214849 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
4 Hb_183820_010 0.1838386285 - - Disease resistance protein RFL1, putative [Ricinus communis]
5 Hb_001103_040 0.1894055227 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
6 Hb_000365_290 0.2004764113 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
7 Hb_083493_020 0.2011796985 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]
8 Hb_022593_030 0.2027725202 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_136884_010 0.210647824 - - Disease resistance protein RFL1, putative [Ricinus communis]
10 Hb_005081_030 0.2149626168 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
11 Hb_001369_560 0.2164721855 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
12 Hb_005237_070 0.2203742895 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
13 Hb_004635_040 0.2241375838 - - Polyprotein, putative [Solanum demissum]
14 Hb_002044_110 0.2250645393 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
15 Hb_002762_070 0.2253799853 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
16 Hb_006020_010 0.232145078 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
17 Hb_006395_010 0.232688966 - - hypothetical protein RCOM_0725500 [Ricinus communis]
18 Hb_011206_050 0.2346716253 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
19 Hb_004122_030 0.2356348828 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
20 Hb_032050_070 0.2367662337 - - PREDICTED: peroxidase 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_003442_010 Hb_003442_010 Hb_000189_490 Hb_000189_490 Hb_003442_010--Hb_000189_490 Hb_001481_020 Hb_001481_020 Hb_003442_010--Hb_001481_020 Hb_183820_010 Hb_183820_010 Hb_003442_010--Hb_183820_010 Hb_001103_040 Hb_001103_040 Hb_003442_010--Hb_001103_040 Hb_000365_290 Hb_000365_290 Hb_003442_010--Hb_000365_290 Hb_083493_020 Hb_083493_020 Hb_003442_010--Hb_083493_020 Hb_031954_010 Hb_031954_010 Hb_000189_490--Hb_031954_010 Hb_000189_490--Hb_001103_040 Hb_004341_010 Hb_004341_010 Hb_000189_490--Hb_004341_010 Hb_001283_010 Hb_001283_010 Hb_000189_490--Hb_001283_010 Hb_000189_490--Hb_000365_290 Hb_000608_020 Hb_000608_020 Hb_001481_020--Hb_000608_020 Hb_001481_020--Hb_000189_490 Hb_001481_020--Hb_000365_290 Hb_004156_010 Hb_004156_010 Hb_001481_020--Hb_004156_010 Hb_068332_010 Hb_068332_010 Hb_001481_020--Hb_068332_010 Hb_136884_010 Hb_136884_010 Hb_183820_010--Hb_136884_010 Hb_012395_150 Hb_012395_150 Hb_183820_010--Hb_012395_150 Hb_000002_230 Hb_000002_230 Hb_183820_010--Hb_000002_230 Hb_183820_010--Hb_000365_290 Hb_006020_010 Hb_006020_010 Hb_183820_010--Hb_006020_010 Hb_004590_010 Hb_004590_010 Hb_183820_010--Hb_004590_010 Hb_011382_050 Hb_011382_050 Hb_001103_040--Hb_011382_050 Hb_001103_040--Hb_083493_020 Hb_027506_050 Hb_027506_050 Hb_001103_040--Hb_027506_050 Hb_009913_010 Hb_009913_010 Hb_001103_040--Hb_009913_010 Hb_002762_070 Hb_002762_070 Hb_000365_290--Hb_002762_070 Hb_006395_010 Hb_006395_010 Hb_000365_290--Hb_006395_010 Hb_000365_290--Hb_001283_010 Hb_027445_080 Hb_027445_080 Hb_000365_290--Hb_027445_080 Hb_028207_030 Hb_028207_030 Hb_000365_290--Hb_028207_030 Hb_000077_460 Hb_000077_460 Hb_000365_290--Hb_000077_460 Hb_004242_070 Hb_004242_070 Hb_083493_020--Hb_004242_070 Hb_083493_020--Hb_000189_490 Hb_002400_370 Hb_002400_370 Hb_083493_020--Hb_002400_370 Hb_157263_010 Hb_157263_010 Hb_083493_020--Hb_157263_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112054 0.369868 0.0698259 0.349821 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.348393 0

CAGE analysis