Hb_027506_050

Information

Type -
Description -
Location Contig27506: 79780-84675
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28831: 81707-82045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027506_050 0.0 - - -
2 Hb_001103_040 0.2050022358 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
3 Hb_011218_050 0.2178915857 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_083493_020 0.2285537161 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]
5 Hb_000189_490 0.2312649733 - - Sulfate/thiosulfate import ATP-binding protein cysA [Theobroma cacao]
6 Hb_000586_060 0.2487500825 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
7 Hb_003442_010 0.2584338225 - - PREDICTED: structural maintenance of chromosomes protein 4-like isoform X2 [Citrus sinensis]
8 Hb_001318_130 0.2608308052 - - PREDICTED: short-chain dehydrogenase reductase 3b-like [Populus euphratica]
9 Hb_022593_030 0.2767363862 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_001481_020 0.2768401062 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
11 Hb_000329_640 0.2809032191 - - -
12 Hb_007441_060 0.282011939 - - -
13 Hb_030399_010 0.2837567665 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
14 Hb_009913_010 0.2841469096 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
15 Hb_012702_030 0.2857161496 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
16 Hb_005147_050 0.2861558855 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
17 Hb_000170_230 0.2868038391 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
18 Hb_081448_010 0.2887696402 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
19 Hb_006711_050 0.2907751502 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
20 Hb_031954_010 0.2913023675 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_027506_050 Hb_027506_050 Hb_001103_040 Hb_001103_040 Hb_027506_050--Hb_001103_040 Hb_011218_050 Hb_011218_050 Hb_027506_050--Hb_011218_050 Hb_083493_020 Hb_083493_020 Hb_027506_050--Hb_083493_020 Hb_000189_490 Hb_000189_490 Hb_027506_050--Hb_000189_490 Hb_000586_060 Hb_000586_060 Hb_027506_050--Hb_000586_060 Hb_003442_010 Hb_003442_010 Hb_027506_050--Hb_003442_010 Hb_001103_040--Hb_000189_490 Hb_011382_050 Hb_011382_050 Hb_001103_040--Hb_011382_050 Hb_001103_040--Hb_003442_010 Hb_001103_040--Hb_083493_020 Hb_009913_010 Hb_009913_010 Hb_001103_040--Hb_009913_010 Hb_005380_030 Hb_005380_030 Hb_011218_050--Hb_005380_030 Hb_017417_030 Hb_017417_030 Hb_011218_050--Hb_017417_030 Hb_002248_090 Hb_002248_090 Hb_011218_050--Hb_002248_090 Hb_011218_050--Hb_000586_060 Hb_051100_010 Hb_051100_010 Hb_011218_050--Hb_051100_010 Hb_002609_150 Hb_002609_150 Hb_011218_050--Hb_002609_150 Hb_004242_070 Hb_004242_070 Hb_083493_020--Hb_004242_070 Hb_083493_020--Hb_003442_010 Hb_083493_020--Hb_000189_490 Hb_002400_370 Hb_002400_370 Hb_083493_020--Hb_002400_370 Hb_157263_010 Hb_157263_010 Hb_083493_020--Hb_157263_010 Hb_031954_010 Hb_031954_010 Hb_000189_490--Hb_031954_010 Hb_000189_490--Hb_003442_010 Hb_004341_010 Hb_004341_010 Hb_000189_490--Hb_004341_010 Hb_001283_010 Hb_001283_010 Hb_000189_490--Hb_001283_010 Hb_000365_290 Hb_000365_290 Hb_000189_490--Hb_000365_290 Hb_000532_130 Hb_000532_130 Hb_000586_060--Hb_000532_130 Hb_000586_060--Hb_002609_150 Hb_000984_100 Hb_000984_100 Hb_000586_060--Hb_000984_100 Hb_010253_020 Hb_010253_020 Hb_000586_060--Hb_010253_020 Hb_001148_040 Hb_001148_040 Hb_000586_060--Hb_001148_040 Hb_001481_020 Hb_001481_020 Hb_003442_010--Hb_001481_020 Hb_183820_010 Hb_183820_010 Hb_003442_010--Hb_183820_010 Hb_003442_010--Hb_000365_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0292829 0.088707 0 0.0271582 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0428839 0

CAGE analysis