Hb_011218_050

Information

Type -
Description -
Location Contig11218: 52891-53997
Sequence    

Annotation

kegg
ID rcu:RCOM_1439660
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002531871.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9T0V2
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_1439660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03672: 52785-53833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011218_050 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_005380_030 0.1546520144 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120 isoform X2 [Jatropha curcas]
3 Hb_017417_030 0.1626771138 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
4 Hb_002248_090 0.1669225094 - - metallothionein 3-like protein [Hevea brasiliensis]
5 Hb_000586_060 0.1676827071 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
6 Hb_051100_010 0.1686991779 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
7 Hb_002609_150 0.170152627 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
8 Hb_135811_060 0.1702016701 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
9 Hb_000172_010 0.1707203602 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
10 Hb_000431_030 0.1715350686 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
11 Hb_000703_320 0.1740324325 - - receptor-kinase, putative [Ricinus communis]
12 Hb_140848_010 0.1743326258 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
13 Hb_000270_010 0.1759784465 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001148_040 0.1804371124 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
15 Hb_000844_010 0.1823302076 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
16 Hb_000521_210 0.1826994779 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
17 Hb_002241_020 0.1855952844 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
18 Hb_002735_010 0.1860402593 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
19 Hb_001377_500 0.1877655882 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
20 Hb_002110_210 0.1892615467 - - purine transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_011218_050 Hb_011218_050 Hb_005380_030 Hb_005380_030 Hb_011218_050--Hb_005380_030 Hb_017417_030 Hb_017417_030 Hb_011218_050--Hb_017417_030 Hb_002248_090 Hb_002248_090 Hb_011218_050--Hb_002248_090 Hb_000586_060 Hb_000586_060 Hb_011218_050--Hb_000586_060 Hb_051100_010 Hb_051100_010 Hb_011218_050--Hb_051100_010 Hb_002609_150 Hb_002609_150 Hb_011218_050--Hb_002609_150 Hb_000703_320 Hb_000703_320 Hb_005380_030--Hb_000703_320 Hb_002110_210 Hb_002110_210 Hb_005380_030--Hb_002110_210 Hb_002241_020 Hb_002241_020 Hb_005380_030--Hb_002241_020 Hb_005147_020 Hb_005147_020 Hb_005380_030--Hb_005147_020 Hb_005380_030--Hb_002248_090 Hb_002735_010 Hb_002735_010 Hb_005380_030--Hb_002735_010 Hb_135811_060 Hb_135811_060 Hb_017417_030--Hb_135811_060 Hb_002219_090 Hb_002219_090 Hb_017417_030--Hb_002219_090 Hb_001073_060 Hb_001073_060 Hb_017417_030--Hb_001073_060 Hb_001009_110 Hb_001009_110 Hb_017417_030--Hb_001009_110 Hb_149056_010 Hb_149056_010 Hb_017417_030--Hb_149056_010 Hb_017417_030--Hb_002248_090 Hb_002239_030 Hb_002239_030 Hb_002248_090--Hb_002239_030 Hb_000101_140 Hb_000101_140 Hb_002248_090--Hb_000101_140 Hb_000521_210 Hb_000521_210 Hb_002248_090--Hb_000521_210 Hb_011928_030 Hb_011928_030 Hb_002248_090--Hb_011928_030 Hb_000431_030 Hb_000431_030 Hb_002248_090--Hb_000431_030 Hb_002248_090--Hb_001073_060 Hb_000532_130 Hb_000532_130 Hb_000586_060--Hb_000532_130 Hb_000586_060--Hb_002609_150 Hb_000984_100 Hb_000984_100 Hb_000586_060--Hb_000984_100 Hb_010253_020 Hb_010253_020 Hb_000586_060--Hb_010253_020 Hb_001148_040 Hb_001148_040 Hb_000586_060--Hb_001148_040 Hb_051100_010--Hb_135811_060 Hb_051100_010--Hb_000521_210 Hb_051100_010--Hb_005380_030 Hb_015473_010 Hb_015473_010 Hb_051100_010--Hb_015473_010 Hb_000856_240 Hb_000856_240 Hb_051100_010--Hb_000856_240 Hb_000172_010 Hb_000172_010 Hb_051100_010--Hb_000172_010 Hb_001879_050 Hb_001879_050 Hb_002609_150--Hb_001879_050 Hb_002609_150--Hb_001148_040 Hb_000007_160 Hb_000007_160 Hb_002609_150--Hb_000007_160 Hb_002609_150--Hb_000532_130 Hb_002609_150--Hb_000172_010 Hb_002739_060 Hb_002739_060 Hb_002609_150--Hb_002739_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3003 215.433 3.5023 79.1076 1.37083 1.33428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.588909 0.138935 0.422591 79.2723 7.13377

CAGE analysis