Hb_002400_370

Information

Type -
Description -
Location Contig2400: 266833-267305
Sequence    

Annotation

kegg
ID pop:POPTR_0006s27370g
description POPTRDRAFT_763531; hypothetical protein
nr
ID XP_012076508.1
description PREDICTED: uncharacterized protein LOC105637607 [Jatropha curcas]
swissprot
ID Q1G3T1
description TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1
trembl
ID A0A067KBN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07133 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_370 0.0 - - PREDICTED: uncharacterized protein LOC105637607 [Jatropha curcas]
2 Hb_002498_210 0.1377463788 - - SKU5 similar 4 isoform 3 [Theobroma cacao]
3 Hb_004242_070 0.1851621074 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
4 Hb_000184_140 0.2183426139 - - conserved hypothetical protein [Ricinus communis]
5 Hb_083493_020 0.2250594033 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]
6 Hb_116360_010 0.2345564108 - - -
7 Hb_000624_020 0.2580953259 transcription factor TF Family: NAC NAC transcription factor 004 [Jatropha curcas]
8 Hb_000646_020 0.2964176445 - - putative gag protein [Coffea canephora]
9 Hb_076233_010 0.2992123777 - - conserved hypothetical protein [Ricinus communis]
10 Hb_121304_020 0.3003841487 - - -
11 Hb_001946_370 0.3361977058 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007545_200 0.3381413192 - - Pectinesterase-3 precursor, putative [Ricinus communis]
13 Hb_119600_020 0.3397856974 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_052802_010 0.3400109457 - - kinase, putative [Ricinus communis]
15 Hb_048944_020 0.3440638761 - - hypothetical protein POPTR_0014s002002g, partial [Populus trichocarpa]
16 Hb_032907_010 0.3473304802 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
17 Hb_026620_010 0.3475130499 - - -
18 Hb_027506_050 0.3483490271 - - -
19 Hb_000663_030 0.3505937906 - - -
20 Hb_001103_040 0.3507377419 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]

Gene co-expression network

sample Hb_002400_370 Hb_002400_370 Hb_002498_210 Hb_002498_210 Hb_002400_370--Hb_002498_210 Hb_004242_070 Hb_004242_070 Hb_002400_370--Hb_004242_070 Hb_000184_140 Hb_000184_140 Hb_002400_370--Hb_000184_140 Hb_083493_020 Hb_083493_020 Hb_002400_370--Hb_083493_020 Hb_116360_010 Hb_116360_010 Hb_002400_370--Hb_116360_010 Hb_000624_020 Hb_000624_020 Hb_002400_370--Hb_000624_020 Hb_000646_020 Hb_000646_020 Hb_002498_210--Hb_000646_020 Hb_002498_210--Hb_000184_140 Hb_076233_010 Hb_076233_010 Hb_002498_210--Hb_076233_010 Hb_002498_210--Hb_083493_020 Hb_002498_210--Hb_116360_010 Hb_004242_070--Hb_083493_020 Hb_004242_070--Hb_002498_210 Hb_004242_070--Hb_116360_010 Hb_157263_010 Hb_157263_010 Hb_004242_070--Hb_157263_010 Hb_001103_040 Hb_001103_040 Hb_004242_070--Hb_001103_040 Hb_000184_140--Hb_076233_010 Hb_000184_140--Hb_000646_020 Hb_007545_200 Hb_007545_200 Hb_000184_140--Hb_007545_200 Hb_020805_160 Hb_020805_160 Hb_000184_140--Hb_020805_160 Hb_083493_020--Hb_001103_040 Hb_003442_010 Hb_003442_010 Hb_083493_020--Hb_003442_010 Hb_000189_490 Hb_000189_490 Hb_083493_020--Hb_000189_490 Hb_083493_020--Hb_157263_010 Hb_052802_010 Hb_052802_010 Hb_116360_010--Hb_052802_010 Hb_000174_020 Hb_000174_020 Hb_116360_010--Hb_000174_020 Hb_116360_010--Hb_007545_200 Hb_008536_030 Hb_008536_030 Hb_116360_010--Hb_008536_030 Hb_121304_020 Hb_121304_020 Hb_000624_020--Hb_121304_020 Hb_000663_030 Hb_000663_030 Hb_000624_020--Hb_000663_030 Hb_001195_080 Hb_001195_080 Hb_000624_020--Hb_001195_080 Hb_004968_010 Hb_004968_010 Hb_000624_020--Hb_004968_010 Hb_010423_010 Hb_010423_010 Hb_000624_020--Hb_010423_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.285511 0.186655 0 0.336452 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.077279 0

CAGE analysis