Hb_000646_020

Information

Type -
Description -
Location Contig646: 114184-115397
Sequence    

Annotation

kegg
ID obr:102707106
description uncharacterized LOC102707106
nr
ID AJE29370.1
description putative gag protein [Coffea canephora]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A0B5CXC3
description Putative gag protein OS=Coffea canephora PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000646_020 0.0 - - putative gag protein [Coffea canephora]
2 Hb_076233_010 0.1643086013 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002498_210 0.1929162457 - - SKU5 similar 4 isoform 3 [Theobroma cacao]
4 Hb_001114_030 0.1944651803 - - Brown planthopper resistance protein [Oryza sativa Indica Group]
5 Hb_001794_080 0.2174638115 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000184_140 0.2177903688 - - conserved hypothetical protein [Ricinus communis]
7 Hb_026620_010 0.2494319463 - - -
8 Hb_119600_020 0.2577980045 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
9 Hb_020805_160 0.2757682272 - - -
10 Hb_002400_370 0.2964176445 - - PREDICTED: uncharacterized protein LOC105637607 [Jatropha curcas]
11 Hb_000445_010 0.2974790752 - - PREDICTED: uncharacterized protein LOC105113411 [Populus euphratica]
12 Hb_003906_030 0.2999773527 - - mads box protein, putative [Ricinus communis]
13 Hb_001975_060 0.3017795219 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
14 Hb_103659_010 0.301878893 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004077_010 0.3019012632 - - retinoblastoma-binding protein, putative [Ricinus communis]
16 Hb_003453_070 0.301950541 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
17 Hb_061641_010 0.3019838893 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
18 Hb_000953_160 0.3020405549 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
19 Hb_003910_030 0.3020568028 - - PREDICTED: probable disease resistance protein At5g66910 [Populus euphratica]
20 Hb_005839_070 0.3021125574 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]

Gene co-expression network

sample Hb_000646_020 Hb_000646_020 Hb_076233_010 Hb_076233_010 Hb_000646_020--Hb_076233_010 Hb_002498_210 Hb_002498_210 Hb_000646_020--Hb_002498_210 Hb_001114_030 Hb_001114_030 Hb_000646_020--Hb_001114_030 Hb_001794_080 Hb_001794_080 Hb_000646_020--Hb_001794_080 Hb_000184_140 Hb_000184_140 Hb_000646_020--Hb_000184_140 Hb_026620_010 Hb_026620_010 Hb_000646_020--Hb_026620_010 Hb_076233_010--Hb_026620_010 Hb_076233_010--Hb_000184_140 Hb_119600_020 Hb_119600_020 Hb_076233_010--Hb_119600_020 Hb_020805_160 Hb_020805_160 Hb_076233_010--Hb_020805_160 Hb_007545_200 Hb_007545_200 Hb_076233_010--Hb_007545_200 Hb_002400_370 Hb_002400_370 Hb_002498_210--Hb_002400_370 Hb_002498_210--Hb_000184_140 Hb_002498_210--Hb_076233_010 Hb_083493_020 Hb_083493_020 Hb_002498_210--Hb_083493_020 Hb_116360_010 Hb_116360_010 Hb_002498_210--Hb_116360_010 Hb_001114_030--Hb_076233_010 Hb_000008_040 Hb_000008_040 Hb_001114_030--Hb_000008_040 Hb_001114_030--Hb_001794_080 Hb_000936_040 Hb_000936_040 Hb_001114_030--Hb_000936_040 Hb_000805_330 Hb_000805_330 Hb_001114_030--Hb_000805_330 Hb_005839_070 Hb_005839_070 Hb_001794_080--Hb_005839_070 Hb_010374_010 Hb_010374_010 Hb_001794_080--Hb_010374_010 Hb_003453_070 Hb_003453_070 Hb_001794_080--Hb_003453_070 Hb_000770_020 Hb_000770_020 Hb_001794_080--Hb_000770_020 Hb_011045_020 Hb_011045_020 Hb_001794_080--Hb_011045_020 Hb_000302_050 Hb_000302_050 Hb_001794_080--Hb_000302_050 Hb_000184_140--Hb_002400_370 Hb_000184_140--Hb_007545_200 Hb_000184_140--Hb_020805_160 Hb_026620_010--Hb_119600_020 Hb_002053_070 Hb_002053_070 Hb_026620_010--Hb_002053_070 Hb_000976_090 Hb_000976_090 Hb_026620_010--Hb_000976_090 Hb_014214_010 Hb_014214_010 Hb_026620_010--Hb_014214_010 Hb_001808_010 Hb_001808_010 Hb_026620_010--Hb_001808_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0217521 0.054374 0 0.0513461 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis