Hb_000805_330

Information

Type -
Description -
Location Contig805: 303108-311563
Sequence    

Annotation

kegg
ID rcu:RCOM_2160640
description ricin-agglutinin family protein (EC:3.2.2.22)
nr
ID XP_010922360.1
description PREDICTED: ricin-like [Elaeis guineensis]
swissprot
ID P02879
description Ricin OS=Ricinus communis PE=1 SV=1
trembl
ID B9T1S0
description rRNA N-glycosidase OS=Ricinus communis GN=RCOM_2160640 PE=3 SV=1
Gene Ontology
ID GO:0005783
description ricin-agglutinin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59008: 309814-310009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_330 0.0 - - PREDICTED: ricin-like [Elaeis guineensis]
2 Hb_007304_100 0.1551621382 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
3 Hb_000008_040 0.1592057598 - - hypothetical protein POPTR_0009s01550g [Populus trichocarpa]
4 Hb_000318_320 0.1658629662 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
5 Hb_008725_190 0.1726195943 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
6 Hb_005183_010 0.1736296412 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
7 Hb_007007_110 0.1808938706 - - hypothetical protein JCGZ_14479 [Jatropha curcas]
8 Hb_002078_210 0.1822919037 - - PREDICTED: cytochrome P450 78A5-like [Jatropha curcas]
9 Hb_047725_010 0.1833101477 - - ceramidase, putative [Ricinus communis]
10 Hb_000983_180 0.1849349464 - - cytochrome P450, putative [Ricinus communis]
11 Hb_001794_080 0.1886602385 - - conserved hypothetical protein [Ricinus communis]
12 Hb_162047_010 0.1913651087 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
13 Hb_001227_010 0.1923250764 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
14 Hb_000207_420 0.1928451144 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
15 Hb_004968_050 0.1938825126 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
16 Hb_003031_070 0.1944927413 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Jatropha curcas]
17 Hb_001481_110 0.198864473 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
18 Hb_000984_120 0.1995976067 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_002107_080 0.2016298806 - - JHL20J20.3 [Jatropha curcas]
20 Hb_091826_010 0.2035367316 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000805_330 Hb_000805_330 Hb_007304_100 Hb_007304_100 Hb_000805_330--Hb_007304_100 Hb_000008_040 Hb_000008_040 Hb_000805_330--Hb_000008_040 Hb_000318_320 Hb_000318_320 Hb_000805_330--Hb_000318_320 Hb_008725_190 Hb_008725_190 Hb_000805_330--Hb_008725_190 Hb_005183_010 Hb_005183_010 Hb_000805_330--Hb_005183_010 Hb_007007_110 Hb_007007_110 Hb_000805_330--Hb_007007_110 Hb_005687_060 Hb_005687_060 Hb_007304_100--Hb_005687_060 Hb_001481_110 Hb_001481_110 Hb_007304_100--Hb_001481_110 Hb_007304_100--Hb_008725_190 Hb_003906_150 Hb_003906_150 Hb_007304_100--Hb_003906_150 Hb_055993_010 Hb_055993_010 Hb_007304_100--Hb_055993_010 Hb_002869_040 Hb_002869_040 Hb_000008_040--Hb_002869_040 Hb_064773_010 Hb_064773_010 Hb_000008_040--Hb_064773_010 Hb_000120_100 Hb_000120_100 Hb_000008_040--Hb_000120_100 Hb_004668_030 Hb_004668_030 Hb_000008_040--Hb_004668_030 Hb_020301_050 Hb_020301_050 Hb_000008_040--Hb_020301_050 Hb_077562_010 Hb_077562_010 Hb_000318_320--Hb_077562_010 Hb_002107_080 Hb_002107_080 Hb_000318_320--Hb_002107_080 Hb_000984_120 Hb_000984_120 Hb_000318_320--Hb_000984_120 Hb_000318_320--Hb_007007_110 Hb_002078_210 Hb_002078_210 Hb_000318_320--Hb_002078_210 Hb_011609_060 Hb_011609_060 Hb_000318_320--Hb_011609_060 Hb_003800_010 Hb_003800_010 Hb_008725_190--Hb_003800_010 Hb_001227_010 Hb_001227_010 Hb_008725_190--Hb_001227_010 Hb_131957_010 Hb_131957_010 Hb_008725_190--Hb_131957_010 Hb_043115_010 Hb_043115_010 Hb_008725_190--Hb_043115_010 Hb_000661_010 Hb_000661_010 Hb_008725_190--Hb_000661_010 Hb_000087_180 Hb_000087_180 Hb_005183_010--Hb_000087_180 Hb_012395_260 Hb_012395_260 Hb_005183_010--Hb_012395_260 Hb_004968_050 Hb_004968_050 Hb_005183_010--Hb_004968_050 Hb_000668_170 Hb_000668_170 Hb_005183_010--Hb_000668_170 Hb_000417_230 Hb_000417_230 Hb_005183_010--Hb_000417_230 Hb_017434_020 Hb_017434_020 Hb_005183_010--Hb_017434_020 Hb_047725_010 Hb_047725_010 Hb_007007_110--Hb_047725_010 Hb_003031_070 Hb_003031_070 Hb_007007_110--Hb_003031_070 Hb_000413_260 Hb_000413_260 Hb_007007_110--Hb_000413_260 Hb_004659_110 Hb_004659_110 Hb_007007_110--Hb_004659_110 Hb_007007_110--Hb_011609_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.293431 10.5533 0.0823588 8.8372 0.527464 0.201019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0386664 0.131856 0.116619 0.144735 0.173458

CAGE analysis