Hb_131957_010

Information

Type -
Description -
Location Contig131957: 3-888
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID GO:0000166
description phosphoprotein phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09250: 38-722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131957_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_004195_030 0.1265605229 - - hypothetical protein POPTR_0006s17880g, partial [Populus trichocarpa]
3 Hb_004458_010 0.1457023744 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
4 Hb_000318_320 0.1538470463 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
5 Hb_008725_190 0.156904006 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
6 Hb_132517_010 0.1587079947 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
7 Hb_001227_010 0.1599978979 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
8 Hb_002078_210 0.1605753442 - - PREDICTED: cytochrome P450 78A5-like [Jatropha curcas]
9 Hb_011609_060 0.1609360283 - - PREDICTED: cytokinin hydroxylase [Jatropha curcas]
10 Hb_000984_120 0.162828311 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_005183_010 0.1643841302 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
12 Hb_087468_010 0.1660010671 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
13 Hb_165552_020 0.1666820721 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_003800_010 0.1698636315 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
15 Hb_003602_080 0.1701843655 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
16 Hb_151616_010 0.1711614552 - - -
17 Hb_002420_030 0.1722160986 - - Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_002107_080 0.1735687593 - - JHL20J20.3 [Jatropha curcas]
19 Hb_005040_010 0.1741601419 - - hypothetical protein RCOM_1110360 [Ricinus communis]
20 Hb_043115_010 0.1747300931 - - hypothetical protein JCGZ_16710 [Jatropha curcas]

Gene co-expression network

sample Hb_131957_010 Hb_131957_010 Hb_004195_030 Hb_004195_030 Hb_131957_010--Hb_004195_030 Hb_004458_010 Hb_004458_010 Hb_131957_010--Hb_004458_010 Hb_000318_320 Hb_000318_320 Hb_131957_010--Hb_000318_320 Hb_008725_190 Hb_008725_190 Hb_131957_010--Hb_008725_190 Hb_132517_010 Hb_132517_010 Hb_131957_010--Hb_132517_010 Hb_001227_010 Hb_001227_010 Hb_131957_010--Hb_001227_010 Hb_005396_110 Hb_005396_110 Hb_004195_030--Hb_005396_110 Hb_004195_030--Hb_132517_010 Hb_087468_010 Hb_087468_010 Hb_004195_030--Hb_087468_010 Hb_008554_010 Hb_008554_010 Hb_004195_030--Hb_008554_010 Hb_160459_030 Hb_160459_030 Hb_004195_030--Hb_160459_030 Hb_001414_120 Hb_001414_120 Hb_004458_010--Hb_001414_120 Hb_000304_040 Hb_000304_040 Hb_004458_010--Hb_000304_040 Hb_001957_050 Hb_001957_050 Hb_004458_010--Hb_001957_050 Hb_005040_010 Hb_005040_010 Hb_004458_010--Hb_005040_010 Hb_003602_080 Hb_003602_080 Hb_004458_010--Hb_003602_080 Hb_006590_030 Hb_006590_030 Hb_004458_010--Hb_006590_030 Hb_077562_010 Hb_077562_010 Hb_000318_320--Hb_077562_010 Hb_002107_080 Hb_002107_080 Hb_000318_320--Hb_002107_080 Hb_000984_120 Hb_000984_120 Hb_000318_320--Hb_000984_120 Hb_007007_110 Hb_007007_110 Hb_000318_320--Hb_007007_110 Hb_002078_210 Hb_002078_210 Hb_000318_320--Hb_002078_210 Hb_011609_060 Hb_011609_060 Hb_000318_320--Hb_011609_060 Hb_003800_010 Hb_003800_010 Hb_008725_190--Hb_003800_010 Hb_008725_190--Hb_001227_010 Hb_007304_100 Hb_007304_100 Hb_008725_190--Hb_007304_100 Hb_043115_010 Hb_043115_010 Hb_008725_190--Hb_043115_010 Hb_000661_010 Hb_000661_010 Hb_008725_190--Hb_000661_010 Hb_005389_090 Hb_005389_090 Hb_132517_010--Hb_005389_090 Hb_132517_010--Hb_005396_110 Hb_001059_050 Hb_001059_050 Hb_132517_010--Hb_001059_050 Hb_001897_030 Hb_001897_030 Hb_132517_010--Hb_001897_030 Hb_151616_010 Hb_151616_010 Hb_132517_010--Hb_151616_010 Hb_132517_010--Hb_001227_010 Hb_002639_120 Hb_002639_120 Hb_001227_010--Hb_002639_120 Hb_021443_020 Hb_021443_020 Hb_001227_010--Hb_021443_020 Hb_001227_010--Hb_151616_010 Hb_006890_050 Hb_006890_050 Hb_001227_010--Hb_006890_050 Hb_001610_050 Hb_001610_050 Hb_001227_010--Hb_001610_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.94539 0.667281 6.4806 0.031407 0.371617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.203926 0.344429 0

CAGE analysis