Hb_004458_010

Information

Type -
Description -
Location Contig4458: 19791-20468
Sequence    

Annotation

kegg
ID rcu:RCOM_1731140
description RING-H2 finger protein ATL1L, putative
nr
ID XP_012086051.1
description PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
swissprot
ID Q6NQG7
description RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1
trembl
ID A0A067JTG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22214 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl78

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004458_010 0.0 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
2 Hb_001414_120 0.0951306995 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
3 Hb_000304_040 0.0985037437 - - PREDICTED: nicotianamine synthase-like [Jatropha curcas]
4 Hb_001957_050 0.1048023278 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_005040_010 0.1120645202 - - hypothetical protein RCOM_1110360 [Ricinus communis]
6 Hb_003602_080 0.1195523455 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
7 Hb_006590_030 0.1240956293 - - unknown [Populus trichocarpa]
8 Hb_039410_010 0.1274702579 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
9 Hb_165552_020 0.1310310953 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_002420_030 0.1415123706 - - Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_000167_090 0.1432132251 - - conserved hypothetical protein [Ricinus communis]
12 Hb_131957_010 0.1457023744 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_002422_010 0.1483355059 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
14 Hb_010012_020 0.1538987852 - - conserved hypothetical protein [Ricinus communis]
15 Hb_043115_010 0.1543364808 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
16 Hb_011609_060 0.1576668457 - - PREDICTED: cytokinin hydroxylase [Jatropha curcas]
17 Hb_000203_090 0.1632929486 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
18 Hb_000983_180 0.1639544874 - - cytochrome P450, putative [Ricinus communis]
19 Hb_009697_010 0.1668283514 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002548_010 0.1750035248 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]

Gene co-expression network

sample Hb_004458_010 Hb_004458_010 Hb_001414_120 Hb_001414_120 Hb_004458_010--Hb_001414_120 Hb_000304_040 Hb_000304_040 Hb_004458_010--Hb_000304_040 Hb_001957_050 Hb_001957_050 Hb_004458_010--Hb_001957_050 Hb_005040_010 Hb_005040_010 Hb_004458_010--Hb_005040_010 Hb_003602_080 Hb_003602_080 Hb_004458_010--Hb_003602_080 Hb_006590_030 Hb_006590_030 Hb_004458_010--Hb_006590_030 Hb_001414_120--Hb_000304_040 Hb_000769_050 Hb_000769_050 Hb_001414_120--Hb_000769_050 Hb_001414_120--Hb_001957_050 Hb_000167_090 Hb_000167_090 Hb_001414_120--Hb_000167_090 Hb_002548_010 Hb_002548_010 Hb_001414_120--Hb_002548_010 Hb_003925_130 Hb_003925_130 Hb_000304_040--Hb_003925_130 Hb_000304_040--Hb_001957_050 Hb_000304_040--Hb_000769_050 Hb_000373_110 Hb_000373_110 Hb_000304_040--Hb_000373_110 Hb_002869_040 Hb_002869_040 Hb_001957_050--Hb_002869_040 Hb_001957_050--Hb_006590_030 Hb_001957_050--Hb_005040_010 Hb_001957_050--Hb_000167_090 Hb_039410_010 Hb_039410_010 Hb_001957_050--Hb_039410_010 Hb_002420_030 Hb_002420_030 Hb_001957_050--Hb_002420_030 Hb_005040_010--Hb_006590_030 Hb_165552_020 Hb_165552_020 Hb_005040_010--Hb_165552_020 Hb_011609_060 Hb_011609_060 Hb_005040_010--Hb_011609_060 Hb_005040_010--Hb_002420_030 Hb_005040_010--Hb_039410_010 Hb_010012_020 Hb_010012_020 Hb_003602_080--Hb_010012_020 Hb_011429_010 Hb_011429_010 Hb_003602_080--Hb_011429_010 Hb_000769_030 Hb_000769_030 Hb_003602_080--Hb_000769_030 Hb_003602_080--Hb_039410_010 Hb_003602_080--Hb_165552_020 Hb_098175_010 Hb_098175_010 Hb_003602_080--Hb_098175_010 Hb_000953_160 Hb_000953_160 Hb_006590_030--Hb_000953_160 Hb_003910_030 Hb_003910_030 Hb_006590_030--Hb_003910_030 Hb_061641_010 Hb_061641_010 Hb_006590_030--Hb_061641_010 Hb_004077_010 Hb_004077_010 Hb_006590_030--Hb_004077_010 Hb_169511_020 Hb_169511_020 Hb_006590_030--Hb_169511_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.04566 0.0865645 0.964646 0 0.0490655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis