Hb_003925_130

Information

Type -
Description -
Location Contig3925: 143130-144081
Sequence    

Annotation

kegg
ID rcu:RCOM_1023660
description glutathione s-transferase, putative (EC:4.4.1.5)
nr
ID XP_002518184.1
description glutathione s-transferase, putative [Ricinus communis]
swissprot
ID Q9FQA3
description Glutathione transferase GST 23 OS=Zea mays PE=2 SV=1
trembl
ID B9RWR5
description Glutathione s-transferase, putative OS=Ricinus communis GN=RCOM_1023660 PE=1 SV=1
Gene Ontology
ID GO:0005515
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003925_130 0.0 - - glutathione s-transferase, putative [Ricinus communis]
2 Hb_000304_040 0.1284959961 - - PREDICTED: nicotianamine synthase-like [Jatropha curcas]
3 Hb_001414_120 0.1339512174 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
4 Hb_000769_050 0.1479729145 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
5 Hb_000925_020 0.1554629189 - - PREDICTED: protein YLS9 [Jatropha curcas]
6 Hb_178711_010 0.165170369 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
7 Hb_002548_010 0.1728687934 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
8 Hb_182625_010 0.1786796672 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
9 Hb_000152_090 0.1788801883 - - unnamed protein product [Coffea canephora]
10 Hb_091336_010 0.1790667929 - - -
11 Hb_004458_010 0.1802208692 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
12 Hb_001104_250 0.1828427833 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
13 Hb_000167_090 0.1832260021 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000203_090 0.1871855984 - - hypothetical protein POPTR_0013s04080g [Populus trichocarpa]
15 Hb_011671_360 0.1907300821 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
16 Hb_001948_100 0.1949372324 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003906_030 0.1955587491 - - mads box protein, putative [Ricinus communis]
18 Hb_003073_060 0.1989237878 - - -
19 Hb_002783_210 0.2018860901 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
20 Hb_039410_010 0.2042977457 - - hypothetical protein JCGZ_23771 [Jatropha curcas]

Gene co-expression network

sample Hb_003925_130 Hb_003925_130 Hb_000304_040 Hb_000304_040 Hb_003925_130--Hb_000304_040 Hb_001414_120 Hb_001414_120 Hb_003925_130--Hb_001414_120 Hb_000769_050 Hb_000769_050 Hb_003925_130--Hb_000769_050 Hb_000925_020 Hb_000925_020 Hb_003925_130--Hb_000925_020 Hb_178711_010 Hb_178711_010 Hb_003925_130--Hb_178711_010 Hb_002548_010 Hb_002548_010 Hb_003925_130--Hb_002548_010 Hb_000304_040--Hb_001414_120 Hb_004458_010 Hb_004458_010 Hb_000304_040--Hb_004458_010 Hb_001957_050 Hb_001957_050 Hb_000304_040--Hb_001957_050 Hb_000304_040--Hb_000769_050 Hb_000373_110 Hb_000373_110 Hb_000304_040--Hb_000373_110 Hb_001414_120--Hb_004458_010 Hb_001414_120--Hb_000769_050 Hb_001414_120--Hb_001957_050 Hb_000167_090 Hb_000167_090 Hb_001414_120--Hb_000167_090 Hb_001414_120--Hb_002548_010 Hb_001104_250 Hb_001104_250 Hb_000769_050--Hb_001104_250 Hb_000769_050--Hb_002548_010 Hb_123887_010 Hb_123887_010 Hb_000769_050--Hb_123887_010 Hb_000152_090 Hb_000152_090 Hb_000769_050--Hb_000152_090 Hb_000769_050--Hb_000167_090 Hb_003442_020 Hb_003442_020 Hb_000769_050--Hb_003442_020 Hb_158110_010 Hb_158110_010 Hb_000925_020--Hb_158110_010 Hb_104855_010 Hb_104855_010 Hb_000925_020--Hb_104855_010 Hb_182625_010 Hb_182625_010 Hb_000925_020--Hb_182625_010 Hb_014361_140 Hb_014361_140 Hb_000925_020--Hb_014361_140 Hb_011671_360 Hb_011671_360 Hb_000925_020--Hb_011671_360 Hb_000061_060 Hb_000061_060 Hb_000925_020--Hb_000061_060 Hb_029622_070 Hb_029622_070 Hb_178711_010--Hb_029622_070 Hb_003531_010 Hb_003531_010 Hb_178711_010--Hb_003531_010 Hb_178711_010--Hb_000304_040 Hb_002081_180 Hb_002081_180 Hb_178711_010--Hb_002081_180 Hb_048183_010 Hb_048183_010 Hb_178711_010--Hb_048183_010 Hb_002548_010--Hb_000167_090 Hb_002548_010--Hb_001104_250 Hb_000203_090 Hb_000203_090 Hb_002548_010--Hb_000203_090 Hb_002548_010--Hb_000152_090 Hb_002548_010--Hb_182625_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.144757 0.0460276 0.261121 0 0.0262402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis