Hb_029622_070

Information

Type -
Description -
Location Contig29622: 40771-42112
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029622_070 0.0 - - -
2 Hb_178711_010 0.1352787487 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
3 Hb_002081_180 0.2239817631 - - hypothetical protein PRUPE_ppa006101mg [Prunus persica]
4 Hb_003925_130 0.2247566898 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_003531_010 0.2455242322 - - scab resistance family protein [Populus trichocarpa]
6 Hb_048183_010 0.245990027 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
7 Hb_002984_030 0.25239429 - - -
8 Hb_000960_020 0.2563611994 - - -
9 Hb_000164_130 0.2571571978 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
10 Hb_007416_080 0.2602161607 - - -
11 Hb_003906_030 0.2661139164 - - mads box protein, putative [Ricinus communis]
12 Hb_002984_020 0.2721106181 - - hypothetical protein EUGRSUZ_J02661 [Eucalyptus grandis]
13 Hb_163400_010 0.2735454128 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
14 Hb_005127_040 0.2763406566 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
15 Hb_000304_040 0.2781101431 - - PREDICTED: nicotianamine synthase-like [Jatropha curcas]
16 Hb_022534_010 0.2866849655 - - hypothetical protein CICLE_v10000066mg [Citrus clementina]
17 Hb_072290_010 0.2896772688 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
18 Hb_055993_010 0.2901542818 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
19 Hb_091336_010 0.2950397296 - - -
20 Hb_035761_010 0.2958950016 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]

Gene co-expression network

sample Hb_029622_070 Hb_029622_070 Hb_178711_010 Hb_178711_010 Hb_029622_070--Hb_178711_010 Hb_002081_180 Hb_002081_180 Hb_029622_070--Hb_002081_180 Hb_003925_130 Hb_003925_130 Hb_029622_070--Hb_003925_130 Hb_003531_010 Hb_003531_010 Hb_029622_070--Hb_003531_010 Hb_048183_010 Hb_048183_010 Hb_029622_070--Hb_048183_010 Hb_002984_030 Hb_002984_030 Hb_029622_070--Hb_002984_030 Hb_178711_010--Hb_003531_010 Hb_178711_010--Hb_003925_130 Hb_000304_040 Hb_000304_040 Hb_178711_010--Hb_000304_040 Hb_178711_010--Hb_002081_180 Hb_178711_010--Hb_048183_010 Hb_002081_180--Hb_003531_010 Hb_005127_040 Hb_005127_040 Hb_002081_180--Hb_005127_040 Hb_027287_010 Hb_027287_010 Hb_002081_180--Hb_027287_010 Hb_116367_010 Hb_116367_010 Hb_002081_180--Hb_116367_010 Hb_003925_130--Hb_000304_040 Hb_001414_120 Hb_001414_120 Hb_003925_130--Hb_001414_120 Hb_000769_050 Hb_000769_050 Hb_003925_130--Hb_000769_050 Hb_000925_020 Hb_000925_020 Hb_003925_130--Hb_000925_020 Hb_002548_010 Hb_002548_010 Hb_003925_130--Hb_002548_010 Hb_003531_010--Hb_116367_010 Hb_003531_010--Hb_005127_040 Hb_072290_010 Hb_072290_010 Hb_003531_010--Hb_072290_010 Hb_007416_080 Hb_007416_080 Hb_048183_010--Hb_007416_080 Hb_133648_010 Hb_133648_010 Hb_048183_010--Hb_133648_010 Hb_048183_010--Hb_072290_010 Hb_001708_010 Hb_001708_010 Hb_048183_010--Hb_001708_010 Hb_000164_130 Hb_000164_130 Hb_048183_010--Hb_000164_130 Hb_000181_450 Hb_000181_450 Hb_002984_030--Hb_000181_450 Hb_001934_010 Hb_001934_010 Hb_002984_030--Hb_001934_010 Hb_000221_070 Hb_000221_070 Hb_002984_030--Hb_000221_070 Hb_160459_030 Hb_160459_030 Hb_002984_030--Hb_160459_030 Hb_003216_020 Hb_003216_020 Hb_002984_030--Hb_003216_020 Hb_008643_020 Hb_008643_020 Hb_002984_030--Hb_008643_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.196694 0.0587643 0.230228 0 0.13653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis