Hb_072290_010

Information

Type -
Description -
Location Contig72290: 190-878
Sequence    

Annotation

kegg
ID vvi:100253609
description GRF1-interacting factor 1-like
nr
ID XP_012492815.1
description PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
swissprot
ID Q8L8A5
description GRF1-interacting factor 1 OS=Arabidopsis thaliana GN=GIF1 PE=1 SV=1
trembl
ID M1CDW6
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401025427 PE=4 SV=1
Gene Ontology
ID GO:0003713
description grf1-interacting factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072290_010 0.0 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
2 Hb_104169_010 0.1599204927 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_048183_010 0.1765152711 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
4 Hb_004705_090 0.1880487351 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002984_020 0.2088044141 - - hypothetical protein EUGRSUZ_J02661 [Eucalyptus grandis]
6 Hb_133648_010 0.2116568809 - - -
7 Hb_178711_010 0.2163067932 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
8 Hb_000893_010 0.2209208805 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
9 Hb_097783_010 0.234263358 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
10 Hb_003531_010 0.2364277062 - - scab resistance family protein [Populus trichocarpa]
11 Hb_000365_040 0.238868754 - - PREDICTED: uncharacterized protein LOC105649097 [Jatropha curcas]
12 Hb_008092_030 0.2409822253 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
13 Hb_035761_010 0.2454456658 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
14 Hb_002820_130 0.2473919427 - - -
15 Hb_007416_080 0.2562226831 - - -
16 Hb_157968_010 0.2579633231 - - Disease resistance protein RPS5, putative [Ricinus communis]
17 Hb_002984_030 0.2599432621 - - -
18 Hb_007889_050 0.2625228799 - - Kynurenine formamidase [Gossypium arboreum]
19 Hb_001247_080 0.2628538183 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001708_010 0.2640790954 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]

Gene co-expression network

sample Hb_072290_010 Hb_072290_010 Hb_104169_010 Hb_104169_010 Hb_072290_010--Hb_104169_010 Hb_048183_010 Hb_048183_010 Hb_072290_010--Hb_048183_010 Hb_004705_090 Hb_004705_090 Hb_072290_010--Hb_004705_090 Hb_002984_020 Hb_002984_020 Hb_072290_010--Hb_002984_020 Hb_133648_010 Hb_133648_010 Hb_072290_010--Hb_133648_010 Hb_178711_010 Hb_178711_010 Hb_072290_010--Hb_178711_010 Hb_104169_010--Hb_004705_090 Hb_000365_040 Hb_000365_040 Hb_104169_010--Hb_000365_040 Hb_009411_030 Hb_009411_030 Hb_104169_010--Hb_009411_030 Hb_000860_030 Hb_000860_030 Hb_104169_010--Hb_000860_030 Hb_008536_030 Hb_008536_030 Hb_104169_010--Hb_008536_030 Hb_007416_080 Hb_007416_080 Hb_048183_010--Hb_007416_080 Hb_048183_010--Hb_133648_010 Hb_001708_010 Hb_001708_010 Hb_048183_010--Hb_001708_010 Hb_048183_010--Hb_178711_010 Hb_000164_130 Hb_000164_130 Hb_048183_010--Hb_000164_130 Hb_000893_010 Hb_000893_010 Hb_004705_090--Hb_000893_010 Hb_004705_090--Hb_009411_030 Hb_001269_570 Hb_001269_570 Hb_004705_090--Hb_001269_570 Hb_004705_090--Hb_048183_010 Hb_007951_090 Hb_007951_090 Hb_002984_020--Hb_007951_090 Hb_003925_130 Hb_003925_130 Hb_002984_020--Hb_003925_130 Hb_010810_040 Hb_010810_040 Hb_002984_020--Hb_010810_040 Hb_000304_040 Hb_000304_040 Hb_002984_020--Hb_000304_040 Hb_002984_020--Hb_178711_010 Hb_158296_010 Hb_158296_010 Hb_133648_010--Hb_158296_010 Hb_097783_010 Hb_097783_010 Hb_133648_010--Hb_097783_010 Hb_133648_010--Hb_007416_080 Hb_000562_010 Hb_000562_010 Hb_133648_010--Hb_000562_010 Hb_029622_070 Hb_029622_070 Hb_178711_010--Hb_029622_070 Hb_003531_010 Hb_003531_010 Hb_178711_010--Hb_003531_010 Hb_178711_010--Hb_003925_130 Hb_178711_010--Hb_000304_040 Hb_002081_180 Hb_002081_180 Hb_178711_010--Hb_002081_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36719 21.5388 2.50656 62.6963 4.50097 16.6346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.31136 0

CAGE analysis