Hb_000365_040

Information

Type -
Description -
Location Contig365: 25799-26611
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14480g
description POPTRDRAFT_825418; hypothetical protein
nr
ID XP_012091042.1
description PREDICTED: uncharacterized protein LOC105649097 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IGU4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s14480g PE=4 SV=2
Gene Ontology
ID GO:0016020
description PREDICTED: uncharacterized protein LOC105649097

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37529: 25808-26243 , PASA_asmbl_37530: 25995-26179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_040 0.0 - - PREDICTED: uncharacterized protein LOC105649097 [Jatropha curcas]
2 Hb_108216_030 0.1482852533 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
3 Hb_005396_030 0.1638369685 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000733_090 0.1704982467 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
5 Hb_001247_080 0.1757673397 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000860_030 0.1758433402 - - conserved hypothetical protein [Ricinus communis]
7 Hb_111985_090 0.1774993408 - - hypothetical protein RCOM_1595950 [Ricinus communis]
8 Hb_002783_210 0.1792209451 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
9 Hb_000705_070 0.1877766919 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008566_070 0.1890790601 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000245_070 0.1891734281 - - PREDICTED: uncharacterized protein LOC105141276 [Populus euphratica]
12 Hb_005643_080 0.1893085878 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
13 Hb_003952_080 0.1905143757 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000103_190 0.1924011456 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
15 Hb_000201_050 0.1938553033 - - -
16 Hb_104169_010 0.1952441256 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_001502_010 0.1962374093 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
18 Hb_000638_110 0.201293801 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
19 Hb_002035_130 0.2026079249 - - plasma membrane H+-ATPase [Hevea brasiliensis]
20 Hb_091140_020 0.202814247 - - PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_040 Hb_000365_040 Hb_108216_030 Hb_108216_030 Hb_000365_040--Hb_108216_030 Hb_005396_030 Hb_005396_030 Hb_000365_040--Hb_005396_030 Hb_000733_090 Hb_000733_090 Hb_000365_040--Hb_000733_090 Hb_001247_080 Hb_001247_080 Hb_000365_040--Hb_001247_080 Hb_000860_030 Hb_000860_030 Hb_000365_040--Hb_000860_030 Hb_111985_090 Hb_111985_090 Hb_000365_040--Hb_111985_090 Hb_003952_080 Hb_003952_080 Hb_108216_030--Hb_003952_080 Hb_156850_040 Hb_156850_040 Hb_108216_030--Hb_156850_040 Hb_009851_040 Hb_009851_040 Hb_108216_030--Hb_009851_040 Hb_001269_570 Hb_001269_570 Hb_108216_030--Hb_001269_570 Hb_108216_030--Hb_001247_080 Hb_000403_100 Hb_000403_100 Hb_005396_030--Hb_000403_100 Hb_017700_030 Hb_017700_030 Hb_005396_030--Hb_017700_030 Hb_002035_130 Hb_002035_130 Hb_005396_030--Hb_002035_130 Hb_005396_030--Hb_111985_090 Hb_005643_080 Hb_005643_080 Hb_005396_030--Hb_005643_080 Hb_020301_010 Hb_020301_010 Hb_005396_030--Hb_020301_010 Hb_049915_010 Hb_049915_010 Hb_000733_090--Hb_049915_010 Hb_103149_010 Hb_103149_010 Hb_000733_090--Hb_103149_010 Hb_000733_090--Hb_003952_080 Hb_000692_230 Hb_000692_230 Hb_000733_090--Hb_000692_230 Hb_000604_050 Hb_000604_050 Hb_000733_090--Hb_000604_050 Hb_008406_030 Hb_008406_030 Hb_000733_090--Hb_008406_030 Hb_001584_040 Hb_001584_040 Hb_001247_080--Hb_001584_040 Hb_000245_070 Hb_000245_070 Hb_001247_080--Hb_000245_070 Hb_004757_040 Hb_004757_040 Hb_001247_080--Hb_004757_040 Hb_002835_120 Hb_002835_120 Hb_001247_080--Hb_002835_120 Hb_001322_010 Hb_001322_010 Hb_000860_030--Hb_001322_010 Hb_000705_070 Hb_000705_070 Hb_000860_030--Hb_000705_070 Hb_022597_010 Hb_022597_010 Hb_000860_030--Hb_022597_010 Hb_001255_030 Hb_001255_030 Hb_000860_030--Hb_001255_030 Hb_000860_030--Hb_156850_040 Hb_000172_150 Hb_000172_150 Hb_000860_030--Hb_000172_150 Hb_008566_070 Hb_008566_070 Hb_111985_090--Hb_008566_070 Hb_003906_150 Hb_003906_150 Hb_111985_090--Hb_003906_150 Hb_006590_040 Hb_006590_040 Hb_111985_090--Hb_006590_040 Hb_005054_010 Hb_005054_010 Hb_111985_090--Hb_005054_010 Hb_002116_020 Hb_002116_020 Hb_111985_090--Hb_002116_020 Hb_111985_090--Hb_005643_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.245298 9.59689 1.34547 26.051 1.87911 1.35777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0612901 0.219378 0.797081 1.82417

CAGE analysis