Hb_003952_080

Information

Type -
Description -
Location Contig3952: 71980-74173
Sequence    

Annotation

kegg
ID rcu:RCOM_0840120
description zinc finger protein, putative
nr
ID XP_002528628.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9LZC5
description GDSL esterase/lipase At5g03820 OS=Arabidopsis thaliana GN=At5g03820 PE=3 SV=1
trembl
ID B9SRK9
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0840120 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at5g03820-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39551: 72451-73956 , PASA_asmbl_39552: 73883-74068 , PASA_asmbl_39553: 74090-74197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003952_080 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000733_090 0.1331315796 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
3 Hb_005227_050 0.1577370415 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000007_470 0.1637338691 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
5 Hb_049915_010 0.175729123 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
6 Hb_108216_030 0.176101367 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
7 Hb_023768_010 0.1775124771 - - -
8 Hb_002053_020 0.1778295644 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
9 Hb_156850_040 0.1790406892 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
10 Hb_001810_040 0.1819909036 - - -
11 Hb_003906_150 0.1831136514 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
12 Hb_005396_030 0.1847487168 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000983_110 0.1893956773 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
14 Hb_000365_040 0.1905143757 - - PREDICTED: uncharacterized protein LOC105649097 [Jatropha curcas]
15 Hb_002874_160 0.1923621284 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000201_050 0.1942241782 - - -
17 Hb_000705_070 0.1951253196 - - conserved hypothetical protein [Ricinus communis]
18 Hb_116091_010 0.1960041578 transcription factor TF Family: bZIP hypothetical protein POPTR_0007s13380g [Populus trichocarpa]
19 Hb_000638_110 0.1963015747 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
20 Hb_006916_070 0.1963611219 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003952_080 Hb_003952_080 Hb_000733_090 Hb_000733_090 Hb_003952_080--Hb_000733_090 Hb_005227_050 Hb_005227_050 Hb_003952_080--Hb_005227_050 Hb_000007_470 Hb_000007_470 Hb_003952_080--Hb_000007_470 Hb_049915_010 Hb_049915_010 Hb_003952_080--Hb_049915_010 Hb_108216_030 Hb_108216_030 Hb_003952_080--Hb_108216_030 Hb_023768_010 Hb_023768_010 Hb_003952_080--Hb_023768_010 Hb_000733_090--Hb_049915_010 Hb_103149_010 Hb_103149_010 Hb_000733_090--Hb_103149_010 Hb_000692_230 Hb_000692_230 Hb_000733_090--Hb_000692_230 Hb_000604_050 Hb_000604_050 Hb_000733_090--Hb_000604_050 Hb_008406_030 Hb_008406_030 Hb_000733_090--Hb_008406_030 Hb_003226_130 Hb_003226_130 Hb_005227_050--Hb_003226_130 Hb_004157_060 Hb_004157_060 Hb_005227_050--Hb_004157_060 Hb_000313_280 Hb_000313_280 Hb_005227_050--Hb_000313_280 Hb_001810_040 Hb_001810_040 Hb_005227_050--Hb_001810_040 Hb_003906_150 Hb_003906_150 Hb_005227_050--Hb_003906_150 Hb_000007_020 Hb_000007_020 Hb_000007_470--Hb_000007_020 Hb_000201_050 Hb_000201_050 Hb_000007_470--Hb_000201_050 Hb_000227_350 Hb_000227_350 Hb_000007_470--Hb_000227_350 Hb_021443_010 Hb_021443_010 Hb_000007_470--Hb_021443_010 Hb_003711_050 Hb_003711_050 Hb_000007_470--Hb_003711_050 Hb_111985_090 Hb_111985_090 Hb_000007_470--Hb_111985_090 Hb_049915_010--Hb_008406_030 Hb_004297_080 Hb_004297_080 Hb_049915_010--Hb_004297_080 Hb_008643_020 Hb_008643_020 Hb_049915_010--Hb_008643_020 Hb_000172_230 Hb_000172_230 Hb_049915_010--Hb_000172_230 Hb_002783_210 Hb_002783_210 Hb_049915_010--Hb_002783_210 Hb_000365_040 Hb_000365_040 Hb_108216_030--Hb_000365_040 Hb_156850_040 Hb_156850_040 Hb_108216_030--Hb_156850_040 Hb_009851_040 Hb_009851_040 Hb_108216_030--Hb_009851_040 Hb_001269_570 Hb_001269_570 Hb_108216_030--Hb_001269_570 Hb_001247_080 Hb_001247_080 Hb_108216_030--Hb_001247_080 Hb_002053_020 Hb_002053_020 Hb_023768_010--Hb_002053_020 Hb_025194_070 Hb_025194_070 Hb_023768_010--Hb_025194_070 Hb_002640_030 Hb_002640_030 Hb_023768_010--Hb_002640_030 Hb_023768_010--Hb_001810_040 Hb_000922_050 Hb_000922_050 Hb_023768_010--Hb_000922_050 Hb_003427_070 Hb_003427_070 Hb_023768_010--Hb_003427_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34076 26.6118 5.34454 82.2702 1.51835 0.771652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.43566 2.42161 1.62525 1.85867 7.37417

CAGE analysis