Hb_000227_350

Information

Type -
Description -
Location Contig227: 307127-308647
Sequence    

Annotation

kegg
ID cic:CICLE_v10006537mg
description hypothetical protein
nr
ID XP_006419890.1
description hypothetical protein CICLE_v10006537mg [Citrus clementina]
swissprot
ID Q9SBA7
description Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2
trembl
ID A0A067GH81
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040949mg PE=3 SV=1
Gene Ontology
ID GO:0016021
description hexose transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23646: 307240-307872 , PASA_asmbl_23647: 308008-308559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_350 0.0 - - hypothetical protein CICLE_v10006537mg [Citrus clementina]
2 Hb_000201_050 0.104212512 - - -
3 Hb_008566_070 0.1048181551 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002170_010 0.1136373273 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
5 Hb_002186_170 0.1152157457 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
6 Hb_128216_010 0.1153519066 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
7 Hb_080601_010 0.119320289 - - metallothionein 3-like protein [Hevea brasiliensis]
8 Hb_027746_030 0.1193500589 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003711_050 0.1217095226 - - Isoflavone reductase, putative [Ricinus communis]
10 Hb_001502_010 0.1273533738 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
11 Hb_008200_010 0.1317632336 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
12 Hb_000007_470 0.133736456 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
13 Hb_000646_040 0.1339257072 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
14 Hb_021443_010 0.1341210005 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
15 Hb_000422_060 0.1390476299 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
16 Hb_111985_090 0.1400909436 - - hypothetical protein RCOM_1595950 [Ricinus communis]
17 Hb_000007_020 0.1412111278 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
18 Hb_003023_030 0.141727925 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
19 Hb_002053_020 0.1427816919 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
20 Hb_001584_250 0.143929051 - - Auxin-induced protein 5NG4, putative [Ricinus communis]

Gene co-expression network

sample Hb_000227_350 Hb_000227_350 Hb_000201_050 Hb_000201_050 Hb_000227_350--Hb_000201_050 Hb_008566_070 Hb_008566_070 Hb_000227_350--Hb_008566_070 Hb_002170_010 Hb_002170_010 Hb_000227_350--Hb_002170_010 Hb_002186_170 Hb_002186_170 Hb_000227_350--Hb_002186_170 Hb_128216_010 Hb_128216_010 Hb_000227_350--Hb_128216_010 Hb_080601_010 Hb_080601_010 Hb_000227_350--Hb_080601_010 Hb_003711_050 Hb_003711_050 Hb_000201_050--Hb_003711_050 Hb_032260_040 Hb_032260_040 Hb_000201_050--Hb_032260_040 Hb_001584_250 Hb_001584_250 Hb_000201_050--Hb_001584_250 Hb_001502_010 Hb_001502_010 Hb_000201_050--Hb_001502_010 Hb_027746_030 Hb_027746_030 Hb_000201_050--Hb_027746_030 Hb_000422_060 Hb_000422_060 Hb_000201_050--Hb_000422_060 Hb_111985_090 Hb_111985_090 Hb_008566_070--Hb_111985_090 Hb_008200_010 Hb_008200_010 Hb_008566_070--Hb_008200_010 Hb_005643_080 Hb_005643_080 Hb_008566_070--Hb_005643_080 Hb_008566_070--Hb_001502_010 Hb_003906_150 Hb_003906_150 Hb_008566_070--Hb_003906_150 Hb_002170_010--Hb_128216_010 Hb_112145_010 Hb_112145_010 Hb_002170_010--Hb_112145_010 Hb_005048_090 Hb_005048_090 Hb_002170_010--Hb_005048_090 Hb_010267_030 Hb_010267_030 Hb_002170_010--Hb_010267_030 Hb_006951_010 Hb_006951_010 Hb_002170_010--Hb_006951_010 Hb_002534_070 Hb_002534_070 Hb_002170_010--Hb_002534_070 Hb_000175_370 Hb_000175_370 Hb_002186_170--Hb_000175_370 Hb_000098_230 Hb_000098_230 Hb_002186_170--Hb_000098_230 Hb_002186_170--Hb_000422_060 Hb_001541_170 Hb_001541_170 Hb_002186_170--Hb_001541_170 Hb_003582_030 Hb_003582_030 Hb_002186_170--Hb_003582_030 Hb_000646_040 Hb_000646_040 Hb_002186_170--Hb_000646_040 Hb_004474_070 Hb_004474_070 Hb_128216_010--Hb_004474_070 Hb_128216_010--Hb_112145_010 Hb_002303_050 Hb_002303_050 Hb_128216_010--Hb_002303_050 Hb_001953_010 Hb_001953_010 Hb_128216_010--Hb_001953_010 Hb_002804_070 Hb_002804_070 Hb_128216_010--Hb_002804_070 Hb_080601_010--Hb_002534_070 Hb_003023_030 Hb_003023_030 Hb_080601_010--Hb_003023_030 Hb_000030_230 Hb_000030_230 Hb_080601_010--Hb_000030_230 Hb_004450_090 Hb_004450_090 Hb_080601_010--Hb_004450_090 Hb_080601_010--Hb_002186_170 Hb_000000_260 Hb_000000_260 Hb_080601_010--Hb_000000_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.4487 1.22418 13.1907 0.0145698 0.0273066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.91727

CAGE analysis