Hb_027746_030

Information

Type -
Description -
Location Contig27746: 18198-19232
Sequence    

Annotation

kegg
ID rcu:RCOM_1469690
description hypothetical protein
nr
ID XP_002514652.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLN3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1469690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027746_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000201_050 0.0943559428 - - -
3 Hb_091140_020 0.0984048848 - - PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]
4 Hb_003711_050 0.099366569 - - Isoflavone reductase, putative [Ricinus communis]
5 Hb_002186_170 0.1019304492 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
6 Hb_032260_040 0.1097315449 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012217_010 0.1154042484 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
8 Hb_000422_060 0.1173646741 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
9 Hb_000227_350 0.1193500589 - - hypothetical protein CICLE_v10006537mg [Citrus clementina]
10 Hb_001541_170 0.1197696956 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
11 Hb_000120_560 0.1199349454 - - protein with unknown function [Ricinus communis]
12 Hb_002053_020 0.1202666267 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
13 Hb_000175_370 0.1228527174 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
14 Hb_001584_250 0.1234073778 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
15 Hb_021443_010 0.1243764287 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
16 Hb_000847_110 0.1248169415 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007441_100 0.125189394 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
18 Hb_032299_020 0.1287068475 - - tonoplast intrinsic protein, putative [Ricinus communis]
19 Hb_000438_180 0.1296011278 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_000098_230 0.1296695357 - - Potassium channel AKT2/3, putative [Ricinus communis]

Gene co-expression network

sample Hb_027746_030 Hb_027746_030 Hb_000201_050 Hb_000201_050 Hb_027746_030--Hb_000201_050 Hb_091140_020 Hb_091140_020 Hb_027746_030--Hb_091140_020 Hb_003711_050 Hb_003711_050 Hb_027746_030--Hb_003711_050 Hb_002186_170 Hb_002186_170 Hb_027746_030--Hb_002186_170 Hb_032260_040 Hb_032260_040 Hb_027746_030--Hb_032260_040 Hb_012217_010 Hb_012217_010 Hb_027746_030--Hb_012217_010 Hb_000201_050--Hb_003711_050 Hb_000201_050--Hb_032260_040 Hb_001584_250 Hb_001584_250 Hb_000201_050--Hb_001584_250 Hb_001502_010 Hb_001502_010 Hb_000201_050--Hb_001502_010 Hb_000422_060 Hb_000422_060 Hb_000201_050--Hb_000422_060 Hb_091140_020--Hb_000201_050 Hb_091140_020--Hb_001584_250 Hb_005695_050 Hb_005695_050 Hb_091140_020--Hb_005695_050 Hb_008200_010 Hb_008200_010 Hb_091140_020--Hb_008200_010 Hb_000227_350 Hb_000227_350 Hb_091140_020--Hb_000227_350 Hb_021443_010 Hb_021443_010 Hb_003711_050--Hb_021443_010 Hb_003711_050--Hb_032260_040 Hb_000438_180 Hb_000438_180 Hb_003711_050--Hb_000438_180 Hb_003711_050--Hb_001584_250 Hb_000853_140 Hb_000853_140 Hb_003711_050--Hb_000853_140 Hb_000175_370 Hb_000175_370 Hb_002186_170--Hb_000175_370 Hb_000098_230 Hb_000098_230 Hb_002186_170--Hb_000098_230 Hb_002186_170--Hb_000422_060 Hb_001541_170 Hb_001541_170 Hb_002186_170--Hb_001541_170 Hb_003582_030 Hb_003582_030 Hb_002186_170--Hb_003582_030 Hb_000646_040 Hb_000646_040 Hb_002186_170--Hb_000646_040 Hb_032260_040--Hb_012217_010 Hb_008406_170 Hb_008406_170 Hb_032260_040--Hb_008406_170 Hb_032260_040--Hb_021443_010 Hb_032260_040--Hb_000853_140 Hb_011930_090 Hb_011930_090 Hb_012217_010--Hb_011930_090 Hb_007441_100 Hb_007441_100 Hb_012217_010--Hb_007441_100 Hb_000847_110 Hb_000847_110 Hb_012217_010--Hb_000847_110 Hb_012217_010--Hb_001541_170 Hb_019299_010 Hb_019299_010 Hb_012217_010--Hb_019299_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.298193 0.112699 1.28539 0 0.0272977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.176979

CAGE analysis