Hb_005643_080

Information

Type -
Description -
Location Contig5643: 63903-64823
Sequence    

Annotation

kegg
ID pop:POPTR_0001s12740g
description POPTRDRAFT_548130; hypothetical protein
nr
ID XP_002297892.1
description hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
swissprot
ID P87216
description Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1
trembl
ID B9GMW3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12740g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005643_080 0.0 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
2 Hb_008566_070 0.1006255552 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006951_010 0.110814246 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
4 Hb_111985_090 0.1201066503 - - hypothetical protein RCOM_1595950 [Ricinus communis]
5 Hb_000604_050 0.1231211512 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
6 Hb_000201_070 0.1244276158 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
7 Hb_010267_030 0.1244375544 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
8 Hb_020301_010 0.1281379416 - - cytochrome P450, putative [Ricinus communis]
9 Hb_002035_130 0.1318349893 - - plasma membrane H+-ATPase [Hevea brasiliensis]
10 Hb_005396_030 0.1321694898 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003906_150 0.133131651 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
12 Hb_002783_210 0.1339013574 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
13 Hb_000983_110 0.136245593 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
14 Hb_002186_030 0.1445684693 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X1 [Populus euphratica]
15 Hb_012395_260 0.1467212691 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
16 Hb_000227_350 0.1511623219 - - hypothetical protein CICLE_v10006537mg [Citrus clementina]
17 Hb_004586_230 0.1526450078 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000172_070 0.1533890898 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
19 Hb_000230_550 0.1548286945 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
20 Hb_004007_190 0.1552579314 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]

Gene co-expression network

sample Hb_005643_080 Hb_005643_080 Hb_008566_070 Hb_008566_070 Hb_005643_080--Hb_008566_070 Hb_006951_010 Hb_006951_010 Hb_005643_080--Hb_006951_010 Hb_111985_090 Hb_111985_090 Hb_005643_080--Hb_111985_090 Hb_000604_050 Hb_000604_050 Hb_005643_080--Hb_000604_050 Hb_000201_070 Hb_000201_070 Hb_005643_080--Hb_000201_070 Hb_010267_030 Hb_010267_030 Hb_005643_080--Hb_010267_030 Hb_008566_070--Hb_111985_090 Hb_008200_010 Hb_008200_010 Hb_008566_070--Hb_008200_010 Hb_001502_010 Hb_001502_010 Hb_008566_070--Hb_001502_010 Hb_000227_350 Hb_000227_350 Hb_008566_070--Hb_000227_350 Hb_003906_150 Hb_003906_150 Hb_008566_070--Hb_003906_150 Hb_002186_030 Hb_002186_030 Hb_006951_010--Hb_002186_030 Hb_112145_010 Hb_112145_010 Hb_006951_010--Hb_112145_010 Hb_006951_010--Hb_000201_070 Hb_004374_170 Hb_004374_170 Hb_006951_010--Hb_004374_170 Hb_002804_070 Hb_002804_070 Hb_006951_010--Hb_002804_070 Hb_002170_010 Hb_002170_010 Hb_006951_010--Hb_002170_010 Hb_111985_090--Hb_003906_150 Hb_006590_040 Hb_006590_040 Hb_111985_090--Hb_006590_040 Hb_005054_010 Hb_005054_010 Hb_111985_090--Hb_005054_010 Hb_002116_020 Hb_002116_020 Hb_111985_090--Hb_002116_020 Hb_000604_050--Hb_003906_150 Hb_000270_530 Hb_000270_530 Hb_000604_050--Hb_000270_530 Hb_003529_010 Hb_003529_010 Hb_000604_050--Hb_003529_010 Hb_004007_190 Hb_004007_190 Hb_000604_050--Hb_004007_190 Hb_103149_010 Hb_103149_010 Hb_000604_050--Hb_103149_010 Hb_000604_050--Hb_008566_070 Hb_000201_070--Hb_010267_030 Hb_000201_070--Hb_112145_010 Hb_155015_020 Hb_155015_020 Hb_000201_070--Hb_155015_020 Hb_172240_010 Hb_172240_010 Hb_000201_070--Hb_172240_010 Hb_000201_070--Hb_002186_030 Hb_005048_090 Hb_005048_090 Hb_010267_030--Hb_005048_090 Hb_000172_070 Hb_000172_070 Hb_010267_030--Hb_000172_070 Hb_005618_010 Hb_005618_010 Hb_010267_030--Hb_005618_010 Hb_010267_030--Hb_002170_010 Hb_010267_030--Hb_112145_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.363759 38.5053 7.7363 57.7378 0.924322 1.93136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.101227 0.079555 0 0.489427 7.08016

CAGE analysis