Hb_004007_190

Information

Type transcription factor
Description TF Family: C2H2
Location Contig4007: 169254-170003
Sequence    

Annotation

kegg
ID rcu:RCOM_0579380
description zinc finger protein, putative
nr
ID XP_012079586.1
description PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
swissprot
ID Q96289
description Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1
trembl
ID A0A067KAM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12524 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_190 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
2 Hb_001318_180 0.0645628325 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
3 Hb_002025_120 0.0785959678 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
4 Hb_003529_010 0.0856053704 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
5 Hb_001675_260 0.0933723812 - - nitrate transporter, putative [Ricinus communis]
6 Hb_000021_010 0.100425517 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000604_050 0.1066119899 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
8 Hb_004659_110 0.1102717795 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
9 Hb_003906_150 0.1113958681 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
10 Hb_002639_120 0.1123906795 - - unnamed protein product [Vitis vinifera]
11 Hb_002422_010 0.1157170694 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
12 Hb_008566_070 0.122734332 - - conserved hypothetical protein [Ricinus communis]
13 Hb_027402_110 0.1227557951 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
14 Hb_003012_010 0.1257495384 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005054_010 0.1298956092 - - amino acid transporter, putative [Ricinus communis]
16 Hb_006890_050 0.1317622858 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
17 Hb_000167_090 0.1321213501 - - conserved hypothetical protein [Ricinus communis]
18 Hb_168031_010 0.1351893743 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
19 Hb_002548_010 0.137142279 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
20 Hb_000702_040 0.1424956548 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_004007_190 Hb_004007_190 Hb_001318_180 Hb_001318_180 Hb_004007_190--Hb_001318_180 Hb_002025_120 Hb_002025_120 Hb_004007_190--Hb_002025_120 Hb_003529_010 Hb_003529_010 Hb_004007_190--Hb_003529_010 Hb_001675_260 Hb_001675_260 Hb_004007_190--Hb_001675_260 Hb_000021_010 Hb_000021_010 Hb_004007_190--Hb_000021_010 Hb_000604_050 Hb_000604_050 Hb_004007_190--Hb_000604_050 Hb_001318_180--Hb_001675_260 Hb_001318_180--Hb_003529_010 Hb_001318_180--Hb_000021_010 Hb_003906_150 Hb_003906_150 Hb_001318_180--Hb_003906_150 Hb_027402_110 Hb_027402_110 Hb_001318_180--Hb_027402_110 Hb_004659_110 Hb_004659_110 Hb_002025_120--Hb_004659_110 Hb_002639_120 Hb_002639_120 Hb_002025_120--Hb_002639_120 Hb_012395_260 Hb_012395_260 Hb_002025_120--Hb_012395_260 Hb_002422_010 Hb_002422_010 Hb_002025_120--Hb_002422_010 Hb_000702_040 Hb_000702_040 Hb_002025_120--Hb_000702_040 Hb_003529_010--Hb_001675_260 Hb_003529_010--Hb_000021_010 Hb_003529_010--Hb_000604_050 Hb_002783_210 Hb_002783_210 Hb_003529_010--Hb_002783_210 Hb_001675_260--Hb_027402_110 Hb_004157_060 Hb_004157_060 Hb_001675_260--Hb_004157_060 Hb_001675_260--Hb_000604_050 Hb_000021_010--Hb_004157_060 Hb_000021_010--Hb_001675_260 Hb_000021_010--Hb_003906_150 Hb_000604_050--Hb_003906_150 Hb_000270_530 Hb_000270_530 Hb_000604_050--Hb_000270_530 Hb_103149_010 Hb_103149_010 Hb_000604_050--Hb_103149_010 Hb_008566_070 Hb_008566_070 Hb_000604_050--Hb_008566_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.79281 0.598549 5.487 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.11737 0.230713

CAGE analysis