Hb_003226_130

Information

Type -
Description -
Location Contig3226: 81305-81586
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20480g
description POPTRDRAFT_710544; hypothetical protein
nr
ID XP_012082797.1
description PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
swissprot
ID P32292
description Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata GN=ARG2 PE=2 SV=1
trembl
ID A0A067JZG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13949 PE=4 SV=1
Gene Ontology
ID GO:0006950
description indole-3-acetic acid-induced protein arg2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34167: 80974-81745
cDNA
(Sanger)
(ID:Location)		 037_I15.ab1: 81029-81745 , 051_A22.ab1: 81092-81745

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_130 0.0 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
2 Hb_007382_130 0.1564517517 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
3 Hb_005227_050 0.1612082317 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000313_280 0.1725238749 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
5 Hb_001810_040 0.1903631478 - - -
6 Hb_123301_010 0.1943606913 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001097_080 0.1972839498 transcription factor TF Family: MYB-related triptychon and cpc, putative [Ricinus communis]
8 Hb_000358_130 0.1975427418 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
9 Hb_000413_080 0.2029710985 - - -
10 Hb_002894_070 0.2047227833 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
11 Hb_000352_240 0.2106431008 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
12 Hb_012753_180 0.2143709576 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
13 Hb_156850_040 0.2318952264 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
14 Hb_002277_020 0.2338454887 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
15 Hb_004308_020 0.2380581495 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
16 Hb_003952_080 0.2390409704 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000302_110 0.2393888009 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_001248_120 0.2402971429 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000164_010 0.2405795571 - - small heat-shock protein, putative [Ricinus communis]
20 Hb_012799_080 0.2433351207 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]

Gene co-expression network

sample Hb_003226_130 Hb_003226_130 Hb_007382_130 Hb_007382_130 Hb_003226_130--Hb_007382_130 Hb_005227_050 Hb_005227_050 Hb_003226_130--Hb_005227_050 Hb_000313_280 Hb_000313_280 Hb_003226_130--Hb_000313_280 Hb_001810_040 Hb_001810_040 Hb_003226_130--Hb_001810_040 Hb_123301_010 Hb_123301_010 Hb_003226_130--Hb_123301_010 Hb_001097_080 Hb_001097_080 Hb_003226_130--Hb_001097_080 Hb_007382_130--Hb_001097_080 Hb_000413_080 Hb_000413_080 Hb_007382_130--Hb_000413_080 Hb_000164_010 Hb_000164_010 Hb_007382_130--Hb_000164_010 Hb_007382_130--Hb_005227_050 Hb_003411_120 Hb_003411_120 Hb_007382_130--Hb_003411_120 Hb_003952_080 Hb_003952_080 Hb_005227_050--Hb_003952_080 Hb_004157_060 Hb_004157_060 Hb_005227_050--Hb_004157_060 Hb_005227_050--Hb_000313_280 Hb_005227_050--Hb_001810_040 Hb_003906_150 Hb_003906_150 Hb_005227_050--Hb_003906_150 Hb_002894_070 Hb_002894_070 Hb_000313_280--Hb_002894_070 Hb_002122_060 Hb_002122_060 Hb_000313_280--Hb_002122_060 Hb_000015_140 Hb_000015_140 Hb_000313_280--Hb_000015_140 Hb_000616_100 Hb_000616_100 Hb_000313_280--Hb_000616_100 Hb_000450_170 Hb_000450_170 Hb_000313_280--Hb_000450_170 Hb_023768_010 Hb_023768_010 Hb_001810_040--Hb_023768_010 Hb_002320_050 Hb_002320_050 Hb_001810_040--Hb_002320_050 Hb_000470_060 Hb_000470_060 Hb_001810_040--Hb_000470_060 Hb_004308_020 Hb_004308_020 Hb_001810_040--Hb_004308_020 Hb_002277_020 Hb_002277_020 Hb_001810_040--Hb_002277_020 Hb_000429_080 Hb_000429_080 Hb_001810_040--Hb_000429_080 Hb_000649_340 Hb_000649_340 Hb_123301_010--Hb_000649_340 Hb_002686_260 Hb_002686_260 Hb_123301_010--Hb_002686_260 Hb_002490_030 Hb_002490_030 Hb_123301_010--Hb_002490_030 Hb_123301_010--Hb_000313_280 Hb_126711_010 Hb_126711_010 Hb_123301_010--Hb_126711_010 Hb_001097_080--Hb_003411_120 Hb_147137_010 Hb_147137_010 Hb_001097_080--Hb_147137_010 Hb_001097_080--Hb_000470_060 Hb_012799_080 Hb_012799_080 Hb_001097_080--Hb_012799_080 Hb_016734_050 Hb_016734_050 Hb_001097_080--Hb_016734_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.91565 402.434 180.411 2260.85 4.03125 15.7264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.9221 303.459 30.0571 89.6725 7.74074

CAGE analysis