Hb_000164_010

Information

Type -
Description -
Location Contig164: 13274-14379
Sequence    

Annotation

kegg
ID rcu:RCOM_0181200
description small heat-shock protein, putative
nr
ID XP_002522824.1
description small heat-shock protein, putative [Ricinus communis]
swissprot
ID Q9FIT9
description 21.7 kDa class VI heat shock protein OS=Arabidopsis thaliana GN=HSP21.7 PE=2 SV=1
trembl
ID B9SA05
description Small heat-shock protein, putative OS=Ricinus communis GN=RCOM_0181200 PE=3 SV=1
Gene Ontology
ID GO:0009408
description kda class vi heat shock protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000164_010 0.0 - - small heat-shock protein, putative [Ricinus communis]
2 Hb_004109_210 0.1609295701 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
3 Hb_003875_010 0.1970360021 - - hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
4 Hb_104571_010 0.1987044117 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
5 Hb_002026_050 0.199799019 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
6 Hb_000020_100 0.2032646049 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
7 Hb_122940_010 0.2038464377 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Populus euphratica]
8 Hb_103942_030 0.2078945175 - - protein with unknown function [Ricinus communis]
9 Hb_007382_130 0.2140828864 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
10 Hb_000177_110 0.2169468034 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
11 Hb_010883_180 0.2172141462 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
12 Hb_002893_030 0.2174071488 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
13 Hb_000413_080 0.2181040517 - - -
14 Hb_000365_280 0.2209702574 - - calcium binding protein/cast, putative [Ricinus communis]
15 Hb_001221_520 0.2223750391 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005227_050 0.2232541904 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004116_070 0.2246374685 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
18 Hb_188281_010 0.2255175178 - - carboxylic ester hydrolase, putative [Ricinus communis]
19 Hb_001597_050 0.2263666174 - - -
20 Hb_131684_010 0.2278438226 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000164_010 Hb_000164_010 Hb_004109_210 Hb_004109_210 Hb_000164_010--Hb_004109_210 Hb_003875_010 Hb_003875_010 Hb_000164_010--Hb_003875_010 Hb_104571_010 Hb_104571_010 Hb_000164_010--Hb_104571_010 Hb_002026_050 Hb_002026_050 Hb_000164_010--Hb_002026_050 Hb_000020_100 Hb_000020_100 Hb_000164_010--Hb_000020_100 Hb_122940_010 Hb_122940_010 Hb_000164_010--Hb_122940_010 Hb_004109_210--Hb_002026_050 Hb_002893_030 Hb_002893_030 Hb_004109_210--Hb_002893_030 Hb_005054_020 Hb_005054_020 Hb_004109_210--Hb_005054_020 Hb_004116_070 Hb_004116_070 Hb_004109_210--Hb_004116_070 Hb_004109_210--Hb_000020_100 Hb_001195_720 Hb_001195_720 Hb_003875_010--Hb_001195_720 Hb_003875_010--Hb_104571_010 Hb_000816_190 Hb_000816_190 Hb_003875_010--Hb_000816_190 Hb_003207_150 Hb_003207_150 Hb_003875_010--Hb_003207_150 Hb_014720_100 Hb_014720_100 Hb_003875_010--Hb_014720_100 Hb_001366_170 Hb_001366_170 Hb_003875_010--Hb_001366_170 Hb_104571_010--Hb_003207_150 Hb_000300_230 Hb_000300_230 Hb_104571_010--Hb_000300_230 Hb_000177_110 Hb_000177_110 Hb_104571_010--Hb_000177_110 Hb_002217_500 Hb_002217_500 Hb_104571_010--Hb_002217_500 Hb_000805_140 Hb_000805_140 Hb_104571_010--Hb_000805_140 Hb_000365_280 Hb_000365_280 Hb_002026_050--Hb_000365_280 Hb_002026_050--Hb_002893_030 Hb_001059_110 Hb_001059_110 Hb_002026_050--Hb_001059_110 Hb_005408_080 Hb_005408_080 Hb_002026_050--Hb_005408_080 Hb_007163_050 Hb_007163_050 Hb_002026_050--Hb_007163_050 Hb_031022_020 Hb_031022_020 Hb_000020_100--Hb_031022_020 Hb_000637_020 Hb_000637_020 Hb_000020_100--Hb_000637_020 Hb_084849_010 Hb_084849_010 Hb_000020_100--Hb_084849_010 Hb_000020_100--Hb_002026_050 Hb_002078_290 Hb_002078_290 Hb_000020_100--Hb_002078_290 Hb_118939_010 Hb_118939_010 Hb_000020_100--Hb_118939_010 Hb_001898_140 Hb_001898_140 Hb_122940_010--Hb_001898_140 Hb_005813_010 Hb_005813_010 Hb_122940_010--Hb_005813_010 Hb_031089_020 Hb_031089_020 Hb_122940_010--Hb_031089_020 Hb_000975_200 Hb_000975_200 Hb_122940_010--Hb_000975_200 Hb_003387_050 Hb_003387_050 Hb_122940_010--Hb_003387_050 Hb_002097_140 Hb_002097_140 Hb_122940_010--Hb_002097_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0295446 1.73266 1.7815 9.04478 0.0900699 0.0265577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.64936 1.53208 0.858585 0.171371 1.12741

CAGE analysis