Hb_004116_070

Information

Type -
Description -
Location Contig4116: 101658-104015
Sequence    

Annotation

kegg
ID rcu:RCOM_0399190
description hydrolase, putative
nr
ID XP_012087559.1
description PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T866
description Hydrolase, putative OS=Ricinus communis GN=RCOM_0399190 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta hydrolase related protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40720: 101619-104264
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_070 0.0 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
2 Hb_002235_060 0.1331055787 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
3 Hb_005054_020 0.1369128587 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
4 Hb_002325_060 0.1429913907 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
5 Hb_002450_030 0.1493892711 - - ATPP2-A13, putative [Ricinus communis]
6 Hb_000928_120 0.1639256815 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
7 Hb_000645_200 0.167649532 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
8 Hb_000000_480 0.1687245749 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
9 Hb_002217_500 0.1687457048 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
10 Hb_000177_110 0.1704990714 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
11 Hb_000735_080 0.1732602683 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
12 Hb_000637_020 0.1741503206 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
13 Hb_147245_010 0.1743019869 - - casein kinase, putative [Ricinus communis]
14 Hb_002281_010 0.1778170815 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
15 Hb_004109_210 0.1792396779 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
16 Hb_002374_270 0.1794770933 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012760_050 0.1811322674 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
18 Hb_084849_010 0.181266624 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000028_430 0.1820686106 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
20 Hb_003964_080 0.1821454769 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]

Gene co-expression network

sample Hb_004116_070 Hb_004116_070 Hb_002235_060 Hb_002235_060 Hb_004116_070--Hb_002235_060 Hb_005054_020 Hb_005054_020 Hb_004116_070--Hb_005054_020 Hb_002325_060 Hb_002325_060 Hb_004116_070--Hb_002325_060 Hb_002450_030 Hb_002450_030 Hb_004116_070--Hb_002450_030 Hb_000928_120 Hb_000928_120 Hb_004116_070--Hb_000928_120 Hb_000645_200 Hb_000645_200 Hb_004116_070--Hb_000645_200 Hb_147245_010 Hb_147245_010 Hb_002235_060--Hb_147245_010 Hb_002374_270 Hb_002374_270 Hb_002235_060--Hb_002374_270 Hb_000922_320 Hb_000922_320 Hb_002235_060--Hb_000922_320 Hb_000000_480 Hb_000000_480 Hb_002235_060--Hb_000000_480 Hb_002235_060--Hb_002325_060 Hb_002235_060--Hb_000928_120 Hb_000028_430 Hb_000028_430 Hb_005054_020--Hb_000028_430 Hb_005054_020--Hb_000928_120 Hb_005054_020--Hb_002325_060 Hb_003849_190 Hb_003849_190 Hb_005054_020--Hb_003849_190 Hb_000365_280 Hb_000365_280 Hb_005054_020--Hb_000365_280 Hb_000056_080 Hb_000056_080 Hb_005054_020--Hb_000056_080 Hb_000622_330 Hb_000622_330 Hb_002325_060--Hb_000622_330 Hb_002325_060--Hb_000922_320 Hb_003670_030 Hb_003670_030 Hb_002325_060--Hb_003670_030 Hb_004218_120 Hb_004218_120 Hb_002325_060--Hb_004218_120 Hb_002281_010 Hb_002281_010 Hb_002325_060--Hb_002281_010 Hb_002450_030--Hb_003849_190 Hb_002217_500 Hb_002217_500 Hb_002450_030--Hb_002217_500 Hb_023344_110 Hb_023344_110 Hb_002450_030--Hb_023344_110 Hb_084849_010 Hb_084849_010 Hb_002450_030--Hb_084849_010 Hb_002450_030--Hb_000645_200 Hb_002450_030--Hb_004218_120 Hb_004522_030 Hb_004522_030 Hb_000928_120--Hb_004522_030 Hb_000283_140 Hb_000283_140 Hb_000928_120--Hb_000283_140 Hb_003001_130 Hb_003001_130 Hb_000928_120--Hb_003001_130 Hb_000928_120--Hb_000622_330 Hb_000570_020 Hb_000570_020 Hb_000928_120--Hb_000570_020 Hb_007537_030 Hb_007537_030 Hb_000928_120--Hb_007537_030 Hb_000012_240 Hb_000012_240 Hb_000645_200--Hb_000012_240 Hb_000529_280 Hb_000529_280 Hb_000645_200--Hb_000529_280 Hb_093458_010 Hb_093458_010 Hb_000645_200--Hb_093458_010 Hb_001728_020 Hb_001728_020 Hb_000645_200--Hb_001728_020 Hb_027654_080 Hb_027654_080 Hb_000645_200--Hb_027654_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.231085 10.5443 12.1029 26.2627 2.82529 0.795673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.86171 6.57146 4.69017 5.18985 5.48386

CAGE analysis