Hb_007163_050

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig7163: 88433-94830
Sequence    

Annotation

kegg
ID rcu:RCOM_0187630
description transcription factor, putative
nr
ID XP_012079519.1
description PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
swissprot
ID Q38827
description Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1
trembl
ID A0A067K7E1
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_12617 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55456: 88423-94843 , PASA_asmbl_55457: 91263-91458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007163_050 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
2 Hb_188281_010 0.1390281316 - - carboxylic ester hydrolase, putative [Ricinus communis]
3 Hb_007749_020 0.148589364 - - receptor-kinase, putative [Ricinus communis]
4 Hb_002026_050 0.1522401225 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
5 Hb_000163_040 0.1545545809 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
6 Hb_000563_140 0.156510337 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
7 Hb_001514_250 0.1622553959 - - GAST1 protein precursor, putative [Ricinus communis]
8 Hb_000260_110 0.1702166788 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
9 Hb_001269_090 0.1703152678 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
10 Hb_002490_030 0.1713940712 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000742_290 0.1717003672 - - Reticuline oxidase precursor, putative [Ricinus communis]
12 Hb_001059_110 0.1729238602 - - PREDICTED: uncharacterized protein LOC105649457 [Jatropha curcas]
13 Hb_001675_290 0.1730711547 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
14 Hb_023768_010 0.1739038564 - - -
15 Hb_000532_150 0.1751276864 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
16 Hb_000365_280 0.1783363586 - - calcium binding protein/cast, putative [Ricinus communis]
17 Hb_002893_030 0.1814087735 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
18 Hb_002272_200 0.1815247627 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
19 Hb_003728_110 0.18287948 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
20 Hb_124951_020 0.1839000985 - - -

Gene co-expression network

sample Hb_007163_050 Hb_007163_050 Hb_188281_010 Hb_188281_010 Hb_007163_050--Hb_188281_010 Hb_007749_020 Hb_007749_020 Hb_007163_050--Hb_007749_020 Hb_002026_050 Hb_002026_050 Hb_007163_050--Hb_002026_050 Hb_000163_040 Hb_000163_040 Hb_007163_050--Hb_000163_040 Hb_000563_140 Hb_000563_140 Hb_007163_050--Hb_000563_140 Hb_001514_250 Hb_001514_250 Hb_007163_050--Hb_001514_250 Hb_002893_030 Hb_002893_030 Hb_188281_010--Hb_002893_030 Hb_000260_110 Hb_000260_110 Hb_188281_010--Hb_000260_110 Hb_000365_280 Hb_000365_280 Hb_188281_010--Hb_000365_280 Hb_000742_290 Hb_000742_290 Hb_188281_010--Hb_000742_290 Hb_001675_290 Hb_001675_290 Hb_188281_010--Hb_001675_290 Hb_007749_020--Hb_001675_290 Hb_036029_020 Hb_036029_020 Hb_007749_020--Hb_036029_020 Hb_003529_240 Hb_003529_240 Hb_007749_020--Hb_003529_240 Hb_000172_230 Hb_000172_230 Hb_007749_020--Hb_000172_230 Hb_107658_010 Hb_107658_010 Hb_007749_020--Hb_107658_010 Hb_002272_200 Hb_002272_200 Hb_007749_020--Hb_002272_200 Hb_004109_210 Hb_004109_210 Hb_002026_050--Hb_004109_210 Hb_002026_050--Hb_000365_280 Hb_002026_050--Hb_002893_030 Hb_001059_110 Hb_001059_110 Hb_002026_050--Hb_001059_110 Hb_005408_080 Hb_005408_080 Hb_002026_050--Hb_005408_080 Hb_029576_070 Hb_029576_070 Hb_000163_040--Hb_029576_070 Hb_087314_010 Hb_087314_010 Hb_000163_040--Hb_087314_010 Hb_005217_070 Hb_005217_070 Hb_000163_040--Hb_005217_070 Hb_000139_050 Hb_000139_050 Hb_000163_040--Hb_000139_050 Hb_000163_040--Hb_000563_140 Hb_000890_120 Hb_000890_120 Hb_000563_140--Hb_000890_120 Hb_004970_100 Hb_004970_100 Hb_000563_140--Hb_004970_100 Hb_002900_180 Hb_002900_180 Hb_000563_140--Hb_002900_180 Hb_000568_020 Hb_000568_020 Hb_000563_140--Hb_000568_020 Hb_005214_050 Hb_005214_050 Hb_000563_140--Hb_005214_050 Hb_000243_340 Hb_000243_340 Hb_000563_140--Hb_000243_340 Hb_000532_150 Hb_000532_150 Hb_001514_250--Hb_000532_150 Hb_001514_250--Hb_000139_050 Hb_062226_150 Hb_062226_150 Hb_001514_250--Hb_062226_150 Hb_001514_250--Hb_002026_050 Hb_000300_190 Hb_000300_190 Hb_001514_250--Hb_000300_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82126 18.6987 29.4588 74.5329 0.42969 0.301027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.89645 2.78963 1.58589 5.86993 5.9036

CAGE analysis