Hb_005217_070

Information

Type -
Description -
Location Contig5217: 108807-109478
Sequence    

Annotation

kegg
ID rcu:RCOM_0664340
description hypothetical protein
nr
ID XP_002533313.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9VE61
description E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1
trembl
ID B9T4Z4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0664340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005217_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_014549_010 0.1299492896 - - PREDICTED: uncharacterized protein LOC101512634 [Cicer arietinum]
3 Hb_011826_010 0.1325021564 - - Disease resistance protein RPM1, putative [Ricinus communis]
4 Hb_036602_010 0.1339188553 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
5 Hb_006721_060 0.1558650994 - - RnaseH (mitochondrion) [Malus domestica]
6 Hb_000163_040 0.1563202761 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
7 Hb_003489_010 0.1625097123 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
8 Hb_004154_010 0.1628719307 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
9 Hb_000635_190 0.1682847429 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
10 Hb_000483_120 0.172600574 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
11 Hb_087314_010 0.1795259648 - - -
12 Hb_096878_010 0.1819741288 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
13 Hb_119583_030 0.1822083898 - - unnamed protein product [Vitis vinifera]
14 Hb_010252_010 0.1835834983 - - -
15 Hb_006197_010 0.1838793161 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
16 Hb_000025_800 0.1843466914 - - hypothetical protein VITISV_020143 [Vitis vinifera]
17 Hb_002163_070 0.1844971266 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
18 Hb_185830_090 0.1869718721 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005599_010 0.1873853526 - - Protein MLO, putative [Ricinus communis]
20 Hb_057721_010 0.1879491215 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_005217_070 Hb_005217_070 Hb_014549_010 Hb_014549_010 Hb_005217_070--Hb_014549_010 Hb_011826_010 Hb_011826_010 Hb_005217_070--Hb_011826_010 Hb_036602_010 Hb_036602_010 Hb_005217_070--Hb_036602_010 Hb_006721_060 Hb_006721_060 Hb_005217_070--Hb_006721_060 Hb_000163_040 Hb_000163_040 Hb_005217_070--Hb_000163_040 Hb_003489_010 Hb_003489_010 Hb_005217_070--Hb_003489_010 Hb_014549_010--Hb_036602_010 Hb_004154_010 Hb_004154_010 Hb_014549_010--Hb_004154_010 Hb_014549_010--Hb_003489_010 Hb_005701_100 Hb_005701_100 Hb_014549_010--Hb_005701_100 Hb_185830_090 Hb_185830_090 Hb_014549_010--Hb_185830_090 Hb_014549_010--Hb_006721_060 Hb_000483_120 Hb_000483_120 Hb_011826_010--Hb_000483_120 Hb_119583_030 Hb_119583_030 Hb_011826_010--Hb_119583_030 Hb_057721_010 Hb_057721_010 Hb_011826_010--Hb_057721_010 Hb_000025_800 Hb_000025_800 Hb_011826_010--Hb_000025_800 Hb_002163_070 Hb_002163_070 Hb_011826_010--Hb_002163_070 Hb_010252_010 Hb_010252_010 Hb_011826_010--Hb_010252_010 Hb_036602_010--Hb_003489_010 Hb_036602_010--Hb_000483_120 Hb_036602_010--Hb_005701_100 Hb_036602_010--Hb_004154_010 Hb_006197_010 Hb_006197_010 Hb_036602_010--Hb_006197_010 Hb_000635_190 Hb_000635_190 Hb_006721_060--Hb_000635_190 Hb_096878_010 Hb_096878_010 Hb_006721_060--Hb_096878_010 Hb_004096_140 Hb_004096_140 Hb_006721_060--Hb_004096_140 Hb_003050_170 Hb_003050_170 Hb_006721_060--Hb_003050_170 Hb_000172_310 Hb_000172_310 Hb_006721_060--Hb_000172_310 Hb_000060_080 Hb_000060_080 Hb_006721_060--Hb_000060_080 Hb_029576_070 Hb_029576_070 Hb_000163_040--Hb_029576_070 Hb_007163_050 Hb_007163_050 Hb_000163_040--Hb_007163_050 Hb_087314_010 Hb_087314_010 Hb_000163_040--Hb_087314_010 Hb_000139_050 Hb_000139_050 Hb_000163_040--Hb_000139_050 Hb_000563_140 Hb_000563_140 Hb_000163_040--Hb_000563_140 Hb_003489_010--Hb_000483_120 Hb_000270_050 Hb_000270_050 Hb_003489_010--Hb_000270_050 Hb_000289_020 Hb_000289_020 Hb_003489_010--Hb_000289_020 Hb_177179_020 Hb_177179_020 Hb_003489_010--Hb_177179_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.325434 0.7873 1.06745 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0673472 0 0.0823585 0

CAGE analysis