Hb_000532_150

Information

Type -
Description -
Location Contig532: 179354-182312
Sequence    

Annotation

kegg
ID rcu:RCOM_1686430
description glutathione-s-transferase theta, gst, putative (EC:2.5.1.18)
nr
ID XP_002509786.1
description glutathione-s-transferase theta, gst, putative [Ricinus communis]
swissprot
ID P43387
description Dichloromethane dehalogenase OS=Methylophilus sp. (strain DM11) GN=dcmA PE=1 SV=2
trembl
ID B9RCA2
description Glutathione-s-transferase theta, gst, putative OS=Ricinus communis GN=RCOM_1686430 PE=3 SV=1
Gene Ontology
ID GO:0004364
description glutathione s-transferase t1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47413: 179043-184603 , PASA_asmbl_47415: 179033-184603
cDNA
(Sanger)
(ID:Location)		 002_M14.ab1: 179210-184571

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000532_150 0.0 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
2 Hb_001514_250 0.1347153499 - - GAST1 protein precursor, putative [Ricinus communis]
3 Hb_001269_090 0.1430331617 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
4 Hb_012743_010 0.1499946896 - - phosphate transporter [Manihot esculenta]
5 Hb_000284_170 0.150540617 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
6 Hb_113676_010 0.1531125743 - - PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
7 Hb_000172_230 0.1532608139 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
8 Hb_001357_280 0.1570187393 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
9 Hb_049915_010 0.1638234313 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
10 Hb_007749_020 0.1649000483 - - receptor-kinase, putative [Ricinus communis]
11 Hb_000139_050 0.166800326 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
12 Hb_001472_140 0.1676705303 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
13 Hb_000594_110 0.1699088384 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
14 Hb_002233_080 0.1705700337 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
15 Hb_007163_050 0.1751276864 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
16 Hb_000732_240 0.1782374274 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
17 Hb_012272_010 0.1807707279 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_076771_010 0.1818293613 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
19 Hb_008643_020 0.1840082024 - - Cf-4/9 disease resistance-like family protein [Populus trichocarpa]
20 Hb_062226_150 0.1848342147 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000532_150 Hb_000532_150 Hb_001514_250 Hb_001514_250 Hb_000532_150--Hb_001514_250 Hb_001269_090 Hb_001269_090 Hb_000532_150--Hb_001269_090 Hb_012743_010 Hb_012743_010 Hb_000532_150--Hb_012743_010 Hb_000284_170 Hb_000284_170 Hb_000532_150--Hb_000284_170 Hb_113676_010 Hb_113676_010 Hb_000532_150--Hb_113676_010 Hb_000172_230 Hb_000172_230 Hb_000532_150--Hb_000172_230 Hb_007163_050 Hb_007163_050 Hb_001514_250--Hb_007163_050 Hb_000139_050 Hb_000139_050 Hb_001514_250--Hb_000139_050 Hb_062226_150 Hb_062226_150 Hb_001514_250--Hb_062226_150 Hb_002026_050 Hb_002026_050 Hb_001514_250--Hb_002026_050 Hb_000300_190 Hb_000300_190 Hb_001514_250--Hb_000300_190 Hb_001269_090--Hb_007163_050 Hb_049915_010 Hb_049915_010 Hb_001269_090--Hb_049915_010 Hb_023768_010 Hb_023768_010 Hb_001269_090--Hb_023768_010 Hb_007749_020 Hb_007749_020 Hb_001269_090--Hb_007749_020 Hb_001357_280 Hb_001357_280 Hb_001269_090--Hb_001357_280 Hb_002233_080 Hb_002233_080 Hb_012743_010--Hb_002233_080 Hb_012272_010 Hb_012272_010 Hb_012743_010--Hb_012272_010 Hb_001329_080 Hb_001329_080 Hb_012743_010--Hb_001329_080 Hb_076771_010 Hb_076771_010 Hb_012743_010--Hb_076771_010 Hb_001472_140 Hb_001472_140 Hb_012743_010--Hb_001472_140 Hb_033327_010 Hb_033327_010 Hb_000284_170--Hb_033327_010 Hb_000284_170--Hb_001472_140 Hb_000594_110 Hb_000594_110 Hb_000284_170--Hb_000594_110 Hb_005048_120 Hb_005048_120 Hb_000284_170--Hb_005048_120 Hb_094437_050 Hb_094437_050 Hb_000284_170--Hb_094437_050 Hb_001459_040 Hb_001459_040 Hb_113676_010--Hb_001459_040 Hb_158349_010 Hb_158349_010 Hb_113676_010--Hb_158349_010 Hb_113676_010--Hb_033327_010 Hb_173271_010 Hb_173271_010 Hb_113676_010--Hb_173271_010 Hb_108670_010 Hb_108670_010 Hb_113676_010--Hb_108670_010 Hb_036029_020 Hb_036029_020 Hb_000172_230--Hb_036029_020 Hb_001675_290 Hb_001675_290 Hb_000172_230--Hb_001675_290 Hb_008643_020 Hb_008643_020 Hb_000172_230--Hb_008643_020 Hb_000172_230--Hb_007749_020 Hb_000172_230--Hb_076771_010 Hb_001675_310 Hb_001675_310 Hb_000172_230--Hb_001675_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.21025 56.2151 56.4091 102.883 2.13239 5.63943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.39497 2.41566 0.697466 4.20062 6.18343

CAGE analysis