Hb_158349_010

Information

Type -
Description -
Location Contig158349: 295-1140
Sequence    

Annotation

kegg
ID cic:CICLE_v10004406mg
description hypothetical protein
nr
ID ADI39635.1
description plastid CUL1 [Hevea brasiliensis]
swissprot
ID Q94AH6
description Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
trembl
ID D8V3L8
description Plastid CUL1 OS=Hevea brasiliensis GN=CUL1 PE=2 SV=1
Gene Ontology
ID GO:0031461
description cullin-1 isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13945: 340-1108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158349_010 0.0 - - plastid CUL1 [Hevea brasiliensis]
2 Hb_143933_010 0.1271283618 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_002965_180 0.1493535148 - - AMSH-like ubiquitin thioesterase 3 [Morus notabilis]
4 Hb_113676_010 0.1504304296 - - PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
5 Hb_091336_010 0.1505528524 - - -
6 Hb_130739_010 0.158230221 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
7 Hb_101370_010 0.1646946498 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
8 Hb_020805_160 0.1855736827 - - -
9 Hb_104855_010 0.187414531 - - -
10 Hb_011671_360 0.191374337 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
11 Hb_000072_010 0.1926005889 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
12 Hb_000925_020 0.1942239401 - - PREDICTED: protein YLS9 [Jatropha curcas]
13 Hb_005773_010 0.1949695467 - - -
14 Hb_182625_010 0.1978916967 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
15 Hb_000061_060 0.1981616967 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
16 Hb_005001_010 0.1996172694 - - GAST1 protein precursor, putative [Ricinus communis]
17 Hb_014361_140 0.1999469934 - - PREDICTED: peroxidase 51 [Jatropha curcas]
18 Hb_108670_010 0.2001390236 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
19 Hb_137349_010 0.2047280129 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
20 Hb_001115_100 0.2074247294 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]

Gene co-expression network

sample Hb_158349_010 Hb_158349_010 Hb_143933_010 Hb_143933_010 Hb_158349_010--Hb_143933_010 Hb_002965_180 Hb_002965_180 Hb_158349_010--Hb_002965_180 Hb_113676_010 Hb_113676_010 Hb_158349_010--Hb_113676_010 Hb_091336_010 Hb_091336_010 Hb_158349_010--Hb_091336_010 Hb_130739_010 Hb_130739_010 Hb_158349_010--Hb_130739_010 Hb_101370_010 Hb_101370_010 Hb_158349_010--Hb_101370_010 Hb_143933_010--Hb_130739_010 Hb_020805_160 Hb_020805_160 Hb_143933_010--Hb_020805_160 Hb_143933_010--Hb_002965_180 Hb_071079_060 Hb_071079_060 Hb_143933_010--Hb_071079_060 Hb_047560_010 Hb_047560_010 Hb_143933_010--Hb_047560_010 Hb_002965_180--Hb_130739_010 Hb_002659_110 Hb_002659_110 Hb_002965_180--Hb_002659_110 Hb_002965_180--Hb_071079_060 Hb_053073_010 Hb_053073_010 Hb_002965_180--Hb_053073_010 Hb_001459_040 Hb_001459_040 Hb_113676_010--Hb_001459_040 Hb_000532_150 Hb_000532_150 Hb_113676_010--Hb_000532_150 Hb_033327_010 Hb_033327_010 Hb_113676_010--Hb_033327_010 Hb_173271_010 Hb_173271_010 Hb_113676_010--Hb_173271_010 Hb_108670_010 Hb_108670_010 Hb_113676_010--Hb_108670_010 Hb_003602_080 Hb_003602_080 Hb_091336_010--Hb_003602_080 Hb_010012_020 Hb_010012_020 Hb_091336_010--Hb_010012_020 Hb_003906_030 Hb_003906_030 Hb_091336_010--Hb_003906_030 Hb_000668_170 Hb_000668_170 Hb_091336_010--Hb_000668_170 Hb_000203_090 Hb_000203_090 Hb_091336_010--Hb_000203_090 Hb_130739_010--Hb_071079_060 Hb_130739_010--Hb_020805_160 Hb_130739_010--Hb_002659_110 Hb_005056_100 Hb_005056_100 Hb_101370_010--Hb_005056_100 Hb_000732_240 Hb_000732_240 Hb_101370_010--Hb_000732_240 Hb_007951_090 Hb_007951_090 Hb_101370_010--Hb_007951_090 Hb_000172_230 Hb_000172_230 Hb_101370_010--Hb_000172_230 Hb_048944_020 Hb_048944_020 Hb_101370_010--Hb_048944_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.25624 31.1978 21.3991 50.4779 0.454579 0.809917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0536991 0

CAGE analysis