Hb_047560_010

Information

Type -
Description -
Location Contig47560: 133-761
Sequence    

Annotation

kegg
ID pop:POPTR_0012s09750g
description POPTRDRAFT_570235; glycosyl transferase family 1 family protein
nr
ID XP_012087112.1
description PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
swissprot
ID Q9XEE9
description GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Arabidopsis thaliana GN=ALG11 PE=1 SV=2
trembl
ID A0A067LJE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01240 PE=4 SV=1
Gene Ontology
ID GO:0009058
description gdp-man:man c -pp-dol alpha- -mannosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047560_010 0.0 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
2 Hb_144547_010 0.1845962822 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_005601_030 0.2038854764 - - organic anion transporter, putative [Ricinus communis]
4 Hb_143933_010 0.2064026989 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_130739_010 0.2241345972 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
6 Hb_001391_050 0.2241632414 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
7 Hb_000197_170 0.2274522207 - - ATP binding protein, putative [Ricinus communis]
8 Hb_001762_050 0.2296203508 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
9 Hb_002343_030 0.240825466 - - conserved hypothetical protein [Ricinus communis]
10 Hb_093385_010 0.2434752861 - - PREDICTED: probable mannitol dehydrogenase [Pyrus x bretschneideri]
11 Hb_002965_180 0.2462063108 - - AMSH-like ubiquitin thioesterase 3 [Morus notabilis]
12 Hb_183671_010 0.2559715113 - - serine carboxypeptidase, putative [Ricinus communis]
13 Hb_158349_010 0.2583185131 - - plastid CUL1 [Hevea brasiliensis]
14 Hb_115832_010 0.2648076102 - - transcription factor, putative [Ricinus communis]
15 Hb_005276_030 0.2653021268 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
16 Hb_122259_010 0.268334854 - - -
17 Hb_000107_260 0.2765581002 - - -
18 Hb_005332_130 0.2793535501 - - Mavicyanin, putative [Ricinus communis]
19 Hb_000406_010 0.2828276393 - - PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
20 Hb_011826_010 0.2857814671 - - Disease resistance protein RPM1, putative [Ricinus communis]

Gene co-expression network

sample Hb_047560_010 Hb_047560_010 Hb_144547_010 Hb_144547_010 Hb_047560_010--Hb_144547_010 Hb_005601_030 Hb_005601_030 Hb_047560_010--Hb_005601_030 Hb_143933_010 Hb_143933_010 Hb_047560_010--Hb_143933_010 Hb_130739_010 Hb_130739_010 Hb_047560_010--Hb_130739_010 Hb_001391_050 Hb_001391_050 Hb_047560_010--Hb_001391_050 Hb_000197_170 Hb_000197_170 Hb_047560_010--Hb_000197_170 Hb_000377_140 Hb_000377_140 Hb_144547_010--Hb_000377_140 Hb_009102_020 Hb_009102_020 Hb_144547_010--Hb_009102_020 Hb_000438_150 Hb_000438_150 Hb_144547_010--Hb_000438_150 Hb_144547_010--Hb_143933_010 Hb_144547_010--Hb_000197_170 Hb_183671_010 Hb_183671_010 Hb_005601_030--Hb_183671_010 Hb_115832_010 Hb_115832_010 Hb_005601_030--Hb_115832_010 Hb_005601_030--Hb_001391_050 Hb_019181_020 Hb_019181_020 Hb_005601_030--Hb_019181_020 Hb_000105_110 Hb_000105_110 Hb_005601_030--Hb_000105_110 Hb_143933_010--Hb_130739_010 Hb_158349_010 Hb_158349_010 Hb_143933_010--Hb_158349_010 Hb_020805_160 Hb_020805_160 Hb_143933_010--Hb_020805_160 Hb_002965_180 Hb_002965_180 Hb_143933_010--Hb_002965_180 Hb_071079_060 Hb_071079_060 Hb_143933_010--Hb_071079_060 Hb_130739_010--Hb_071079_060 Hb_130739_010--Hb_002965_180 Hb_130739_010--Hb_020805_160 Hb_002659_110 Hb_002659_110 Hb_130739_010--Hb_002659_110 Hb_130739_010--Hb_158349_010 Hb_001391_050--Hb_183671_010 Hb_001391_050--Hb_115832_010 Hb_000107_260 Hb_000107_260 Hb_001391_050--Hb_000107_260 Hb_000375_140 Hb_000375_140 Hb_001391_050--Hb_000375_140 Hb_000413_150 Hb_000413_150 Hb_000197_170--Hb_000413_150 Hb_003032_060 Hb_003032_060 Hb_000197_170--Hb_003032_060 Hb_005276_030 Hb_005276_030 Hb_000197_170--Hb_005276_030 Hb_096473_010 Hb_096473_010 Hb_000197_170--Hb_096473_010 Hb_093385_010 Hb_093385_010 Hb_000197_170--Hb_093385_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47416 1.53993 4.13462 5.10537 0 0.0654187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis