Hb_071079_060

Information

Type -
Description -
Location Contig71079: 43959-45238
Sequence    

Annotation

kegg
ID pop:POPTR_0012s01440g
description hypothetical protein
nr
ID XP_011007946.1
description PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5FT81
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01440g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071079_060 0.0 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
2 Hb_130739_010 0.1139667778 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_004204_040 0.1268089103 - - -
4 Hb_001810_050 0.1364103502 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012640_010 0.1407541225 - - -
6 Hb_020805_160 0.1472194623 - - -
7 Hb_002659_110 0.1598148375 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
8 Hb_045786_010 0.1613552243 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_008196_010 0.163244 - - unnamed protein product [Coffea canephora]
10 Hb_000579_210 0.1705894624 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
11 Hb_000174_130 0.1718989363 - - flowering locus T-like protein [Fagus crenata]
12 Hb_166700_010 0.1728409755 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
13 Hb_151027_010 0.174240093 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
14 Hb_104362_020 0.1748287681 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_179367_010 0.1749702877 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
16 Hb_103000_010 0.1759187391 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
17 Hb_004652_040 0.1769468674 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_009851_040 0.1780595119 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002014_120 0.1787052893 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
20 Hb_003337_010 0.1804488015 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_071079_060 Hb_071079_060 Hb_130739_010 Hb_130739_010 Hb_071079_060--Hb_130739_010 Hb_004204_040 Hb_004204_040 Hb_071079_060--Hb_004204_040 Hb_001810_050 Hb_001810_050 Hb_071079_060--Hb_001810_050 Hb_012640_010 Hb_012640_010 Hb_071079_060--Hb_012640_010 Hb_020805_160 Hb_020805_160 Hb_071079_060--Hb_020805_160 Hb_002659_110 Hb_002659_110 Hb_071079_060--Hb_002659_110 Hb_143933_010 Hb_143933_010 Hb_130739_010--Hb_143933_010 Hb_002965_180 Hb_002965_180 Hb_130739_010--Hb_002965_180 Hb_130739_010--Hb_020805_160 Hb_130739_010--Hb_002659_110 Hb_158349_010 Hb_158349_010 Hb_130739_010--Hb_158349_010 Hb_004204_040--Hb_002659_110 Hb_004204_040--Hb_001810_050 Hb_010926_020 Hb_010926_020 Hb_004204_040--Hb_010926_020 Hb_052802_010 Hb_052802_010 Hb_004204_040--Hb_052802_010 Hb_057018_010 Hb_057018_010 Hb_004204_040--Hb_057018_010 Hb_001810_050--Hb_012640_010 Hb_001810_050--Hb_052802_010 Hb_002894_020 Hb_002894_020 Hb_001810_050--Hb_002894_020 Hb_006052_080 Hb_006052_080 Hb_001810_050--Hb_006052_080 Hb_178343_010 Hb_178343_010 Hb_012640_010--Hb_178343_010 Hb_000343_170 Hb_000343_170 Hb_012640_010--Hb_000343_170 Hb_003906_040 Hb_003906_040 Hb_012640_010--Hb_003906_040 Hb_012640_010--Hb_006052_080 Hb_020805_160--Hb_143933_010 Hb_119600_020 Hb_119600_020 Hb_020805_160--Hb_119600_020 Hb_005001_010 Hb_005001_010 Hb_020805_160--Hb_005001_010 Hb_009851_040 Hb_009851_040 Hb_020805_160--Hb_009851_040 Hb_002659_110--Hb_002965_180 Hb_087314_010 Hb_087314_010 Hb_002659_110--Hb_087314_010 Hb_048987_020 Hb_048987_020 Hb_002659_110--Hb_048987_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0577598 0.131844 0.103996 0.706038 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis