Hb_012640_010

Information

Type -
Description -
Location Contig12640: 4821-6880
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012640_010 0.0 - - -
2 Hb_001810_050 0.1106755982 - - conserved hypothetical protein [Ricinus communis]
3 Hb_071079_060 0.1407541225 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
4 Hb_178343_010 0.1537244329 - - PREDICTED: two-component response regulator ARR17-like [Jatropha curcas]
5 Hb_000343_170 0.16186079 - - PREDICTED: probable sulfate transporter 3.4 [Jatropha curcas]
6 Hb_003906_040 0.1628982645 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like [Tarenaya hassleriana]
7 Hb_006052_080 0.1654922841 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH140-like [Populus euphratica]
8 Hb_052802_010 0.1679897216 - - kinase, putative [Ricinus communis]
9 Hb_181191_010 0.1733827178 - - kinase, putative [Ricinus communis]
10 Hb_008727_090 0.174271527 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
11 Hb_000203_120 0.1756837058 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000320_250 0.1789277379 - - hypothetical protein POPTR_0021s00440g [Populus trichocarpa]
13 Hb_000203_110 0.1816603183 - - -
14 Hb_003747_080 0.1817125017 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_006275_080 0.1838496663 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
16 Hb_000628_100 0.1839698626 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
17 Hb_015085_010 0.1846877384 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
18 Hb_004204_040 0.1850107941 - - -
19 Hb_000027_010 0.1858716857 - - -
20 Hb_103931_010 0.1869876774 - - -

Gene co-expression network

sample Hb_012640_010 Hb_012640_010 Hb_001810_050 Hb_001810_050 Hb_012640_010--Hb_001810_050 Hb_071079_060 Hb_071079_060 Hb_012640_010--Hb_071079_060 Hb_178343_010 Hb_178343_010 Hb_012640_010--Hb_178343_010 Hb_000343_170 Hb_000343_170 Hb_012640_010--Hb_000343_170 Hb_003906_040 Hb_003906_040 Hb_012640_010--Hb_003906_040 Hb_006052_080 Hb_006052_080 Hb_012640_010--Hb_006052_080 Hb_004204_040 Hb_004204_040 Hb_001810_050--Hb_004204_040 Hb_052802_010 Hb_052802_010 Hb_001810_050--Hb_052802_010 Hb_001810_050--Hb_071079_060 Hb_002894_020 Hb_002894_020 Hb_001810_050--Hb_002894_020 Hb_001810_050--Hb_006052_080 Hb_130739_010 Hb_130739_010 Hb_071079_060--Hb_130739_010 Hb_071079_060--Hb_004204_040 Hb_020805_160 Hb_020805_160 Hb_071079_060--Hb_020805_160 Hb_002659_110 Hb_002659_110 Hb_071079_060--Hb_002659_110 Hb_178343_010--Hb_003906_040 Hb_012753_140 Hb_012753_140 Hb_178343_010--Hb_012753_140 Hb_120496_010 Hb_120496_010 Hb_178343_010--Hb_120496_010 Hb_017524_020 Hb_017524_020 Hb_178343_010--Hb_017524_020 Hb_001277_390 Hb_001277_390 Hb_178343_010--Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_178343_010--Hb_118941_010 Hb_007545_200 Hb_007545_200 Hb_000343_170--Hb_007545_200 Hb_097783_010 Hb_097783_010 Hb_000343_170--Hb_097783_010 Hb_000343_170--Hb_001810_050 Hb_000172_260 Hb_000172_260 Hb_000343_170--Hb_000172_260 Hb_045786_010 Hb_045786_010 Hb_000343_170--Hb_045786_010 Hb_003906_040--Hb_012753_140 Hb_109187_010 Hb_109187_010 Hb_003906_040--Hb_109187_010 Hb_000589_080 Hb_000589_080 Hb_003906_040--Hb_000589_080 Hb_005694_140 Hb_005694_140 Hb_003906_040--Hb_005694_140 Hb_116486_010 Hb_116486_010 Hb_003906_040--Hb_116486_010 Hb_000035_510 Hb_000035_510 Hb_006052_080--Hb_000035_510 Hb_000027_010 Hb_000027_010 Hb_006052_080--Hb_000027_010 Hb_005463_120 Hb_005463_120 Hb_006052_080--Hb_005463_120 Hb_008727_090 Hb_008727_090 Hb_006052_080--Hb_008727_090 Hb_181191_010 Hb_181191_010 Hb_006052_080--Hb_181191_010 Hb_000203_120 Hb_000203_120 Hb_006052_080--Hb_000203_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.635726 0.960401 0.398564 9.32712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis