Hb_000589_080

Information

Type -
Description -
Location Contig589: 40234-41162
Sequence    

Annotation

kegg
ID cic:CICLE_v10032537mg
description hypothetical protein
nr
ID XP_006435536.1
description hypothetical protein CICLE_v10032537mg [Citrus clementina]
swissprot
ID P12863
description Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3
trembl
ID V4TGE9
description Triosephosphate isomerase OS=Citrus clementina GN=CICLE_v10032537mg PE=3 SV=1
Gene Ontology
ID GO:0004807
description triosephosphate cytosolic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_080 0.0 - - hypothetical protein CICLE_v10032537mg [Citrus clementina]
2 Hb_109187_010 0.0432035401 - - PREDICTED: serine/threonine-protein kinase CDL1 [Cucumis sativus]
3 Hb_000579_160 0.1053757213 - - PREDICTED: uncharacterized protein LOC104216549 isoform X1 [Nicotiana sylvestris]
4 Hb_003092_010 0.1136271545 - - hypothetical protein POPTR_0025s00750g [Populus trichocarpa]
5 Hb_000002_190 0.1272650712 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
6 Hb_000003_520 0.1272650712 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
7 Hb_000005_170 0.1272650712 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
8 Hb_000009_230 0.1272650712 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]
9 Hb_000011_110 0.1272650712 - - PREDICTED: uncharacterized protein LOC105631299 [Jatropha curcas]
10 Hb_000012_390 0.1272650712 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000018_070 0.1272650712 - - PREDICTED: amino acid permease 8-like [Jatropha curcas]
12 Hb_000020_130 0.1272650712 - - conidial pigment biosynthesis oxidase Arb2/brown2 [Aspergillus clavatus NRRL 1]
13 Hb_000024_090 0.1272650712 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000025_560 0.1272650712 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_000028_310 0.1272650712 - - PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
16 Hb_000037_140 0.1272650712 - - PREDICTED: uncharacterized protein LOC104586896 [Nelumbo nucifera]
17 Hb_000046_420 0.1272650712 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
18 Hb_000054_180 0.1272650712 - - PREDICTED: uncharacterized protein LOC105636626 [Jatropha curcas]
19 Hb_000069_450 0.1272650712 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
20 Hb_000076_230 0.1272650712 - - PREDICTED: uncharacterized protein LOC105647061, partial [Jatropha curcas]

Gene co-expression network

sample Hb_000589_080 Hb_000589_080 Hb_109187_010 Hb_109187_010 Hb_000589_080--Hb_109187_010 Hb_000579_160 Hb_000579_160 Hb_000589_080--Hb_000579_160 Hb_003092_010 Hb_003092_010 Hb_000589_080--Hb_003092_010 Hb_000002_190 Hb_000002_190 Hb_000589_080--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_000589_080--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_000589_080--Hb_000005_170 Hb_109187_010--Hb_000579_160 Hb_003050_240 Hb_003050_240 Hb_109187_010--Hb_003050_240 Hb_003906_040 Hb_003906_040 Hb_109187_010--Hb_003906_040 Hb_178343_010 Hb_178343_010 Hb_109187_010--Hb_178343_010 Hb_109187_010--Hb_003092_010 Hb_000579_160--Hb_003050_240 Hb_000579_160--Hb_003906_040 Hb_036693_020 Hb_036693_020 Hb_000579_160--Hb_036693_020 Hb_000579_160--Hb_178343_010 Hb_001322_200 Hb_001322_200 Hb_003092_010--Hb_001322_200 Hb_000103_210 Hb_000103_210 Hb_003092_010--Hb_000103_210 Hb_000203_130 Hb_000203_130 Hb_003092_010--Hb_000203_130 Hb_060416_010 Hb_060416_010 Hb_003092_010--Hb_060416_010 Hb_001817_050 Hb_001817_050 Hb_003092_010--Hb_001817_050 Hb_003092_010--Hb_000002_190 Hb_000002_190--Hb_000003_520 Hb_000002_190--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_000002_190--Hb_000009_230 Hb_000011_110 Hb_000011_110 Hb_000002_190--Hb_000011_110 Hb_000012_390 Hb_000012_390 Hb_000002_190--Hb_000012_390 Hb_000018_070 Hb_000018_070 Hb_000002_190--Hb_000018_070 Hb_000002_190--Hb_000003_520 Hb_000002_190--Hb_000005_170 Hb_000002_190--Hb_000009_230 Hb_000002_190--Hb_000011_110 Hb_000002_190--Hb_000012_390 Hb_000002_190--Hb_000018_070 Hb_000002_190--Hb_000003_520 Hb_000002_190--Hb_000005_170 Hb_000002_190--Hb_000009_230 Hb_000002_190--Hb_000011_110 Hb_000002_190--Hb_000012_390 Hb_000002_190--Hb_000018_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.238766 0 0 7.2187 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis