Hb_178343_010

Information

Type -
Description -
Location Contig178343: 1050-2285
Sequence    

Annotation

kegg
ID rcu:RCOM_1044460
description receptor histidine kinase, putative
nr
ID XP_012082625.1
description PREDICTED: two-component response regulator ARR17-like [Jatropha curcas]
swissprot
ID Q9ZWS9
description Two-component response regulator ARR3 OS=Arabidopsis thaliana GN=ARR3 PE=2 SV=1
trembl
ID A0A067K9K8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19526 PE=4 SV=1
Gene Ontology
ID GO:0005622
description response regulator partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178343_010 0.0 - - PREDICTED: two-component response regulator ARR17-like [Jatropha curcas]
2 Hb_003906_040 0.0954007395 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like [Tarenaya hassleriana]
3 Hb_012753_140 0.1262127452 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
4 Hb_120496_010 0.1262719128 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
5 Hb_017524_020 0.1302823811 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
6 Hb_001277_390 0.1321556084 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
7 Hb_118941_010 0.1323452094 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
8 Hb_000589_080 0.1339402848 - - hypothetical protein CICLE_v10032537mg [Citrus clementina]
9 Hb_031822_020 0.1357243642 - - PREDICTED: uncharacterized protein LOC104613080 [Nelumbo nucifera]
10 Hb_000042_120 0.1372327781 - - PREDICTED: uncharacterized protein LOC105632800 [Jatropha curcas]
11 Hb_007441_320 0.1384335227 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
12 Hb_000027_020 0.1389542541 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
13 Hb_000224_070 0.1419943275 - - -
14 Hb_109187_010 0.1421339224 - - PREDICTED: serine/threonine-protein kinase CDL1 [Cucumis sativus]
15 Hb_003747_080 0.1455135459 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
16 Hb_002105_070 0.1459869859 - - conserved hypothetical protein [Ricinus communis]
17 Hb_116486_010 0.1467824539 - - MADS-box transcription factor, partial [Sapria himalayana]
18 Hb_137821_010 0.147158613 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
19 Hb_000628_080 0.1472694482 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
20 Hb_005694_140 0.1475617339 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_178343_010 Hb_178343_010 Hb_003906_040 Hb_003906_040 Hb_178343_010--Hb_003906_040 Hb_012753_140 Hb_012753_140 Hb_178343_010--Hb_012753_140 Hb_120496_010 Hb_120496_010 Hb_178343_010--Hb_120496_010 Hb_017524_020 Hb_017524_020 Hb_178343_010--Hb_017524_020 Hb_001277_390 Hb_001277_390 Hb_178343_010--Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_178343_010--Hb_118941_010 Hb_003906_040--Hb_012753_140 Hb_109187_010 Hb_109187_010 Hb_003906_040--Hb_109187_010 Hb_000589_080 Hb_000589_080 Hb_003906_040--Hb_000589_080 Hb_005694_140 Hb_005694_140 Hb_003906_040--Hb_005694_140 Hb_116486_010 Hb_116486_010 Hb_003906_040--Hb_116486_010 Hb_031822_020 Hb_031822_020 Hb_012753_140--Hb_031822_020 Hb_137821_010 Hb_137821_010 Hb_012753_140--Hb_137821_010 Hb_000629_140 Hb_000629_140 Hb_012753_140--Hb_000629_140 Hb_012753_140--Hb_005694_140 Hb_120496_010--Hb_001277_390 Hb_000203_110 Hb_000203_110 Hb_120496_010--Hb_000203_110 Hb_003747_080 Hb_003747_080 Hb_120496_010--Hb_003747_080 Hb_120496_010--Hb_118941_010 Hb_000224_070 Hb_000224_070 Hb_120496_010--Hb_000224_070 Hb_007441_320 Hb_007441_320 Hb_120496_010--Hb_007441_320 Hb_000628_080 Hb_000628_080 Hb_017524_020--Hb_000628_080 Hb_017524_020--Hb_001277_390 Hb_000905_130 Hb_000905_130 Hb_017524_020--Hb_000905_130 Hb_103942_020 Hb_103942_020 Hb_017524_020--Hb_103942_020 Hb_001454_030 Hb_001454_030 Hb_017524_020--Hb_001454_030 Hb_017524_020--Hb_000224_070 Hb_001277_390--Hb_118941_010 Hb_001277_390--Hb_000224_070 Hb_001591_020 Hb_001591_020 Hb_001277_390--Hb_001591_020 Hb_000733_170 Hb_000733_170 Hb_001277_390--Hb_000733_170 Hb_001892_040 Hb_001892_040 Hb_001277_390--Hb_001892_040 Hb_118941_010--Hb_000224_070 Hb_000027_020 Hb_000027_020 Hb_118941_010--Hb_000027_020 Hb_153199_010 Hb_153199_010 Hb_118941_010--Hb_153199_010 Hb_007432_040 Hb_007432_040 Hb_118941_010--Hb_007432_040 Hb_004032_170 Hb_004032_170 Hb_118941_010--Hb_004032_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.70186 5.94372 3.49602 249.755 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis