Hb_000579_160

Information

Type -
Description -
Location Contig579: 168852-169669
Sequence    

Annotation

kegg
ID sot:102592702
description uncharacterized LOC102592702
nr
ID XP_009764925.1
description PREDICTED: uncharacterized protein LOC104216549 isoform X1 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID F8UTT6
description Transposase OS=Solanum demissum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_160 0.0 - - PREDICTED: uncharacterized protein LOC104216549 isoform X1 [Nicotiana sylvestris]
2 Hb_109187_010 0.0630081206 - - PREDICTED: serine/threonine-protein kinase CDL1 [Cucumis sativus]
3 Hb_003050_240 0.0667748217 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000589_080 0.1053757213 - - hypothetical protein CICLE_v10032537mg [Citrus clementina]
5 Hb_003906_040 0.1620668781 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like [Tarenaya hassleriana]
6 Hb_036693_020 0.1649537688 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
7 Hb_178343_010 0.1727161286 - - PREDICTED: two-component response regulator ARR17-like [Jatropha curcas]
8 Hb_000164_210 0.173538088 - - glutaredoxin-1, grx1, putative [Ricinus communis]
9 Hb_000042_120 0.2015747108 - - PREDICTED: uncharacterized protein LOC105632800 [Jatropha curcas]
10 Hb_003092_010 0.2038592764 - - hypothetical protein POPTR_0025s00750g [Populus trichocarpa]
11 Hb_063907_010 0.21365482 - - -
12 Hb_000002_190 0.2161481887 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
13 Hb_000003_520 0.2161481887 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
14 Hb_000005_170 0.2161481887 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
15 Hb_000009_230 0.2161481887 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]
16 Hb_000011_110 0.2161481887 - - PREDICTED: uncharacterized protein LOC105631299 [Jatropha curcas]
17 Hb_000012_390 0.2161481887 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000018_070 0.2161481887 - - PREDICTED: amino acid permease 8-like [Jatropha curcas]
19 Hb_000020_130 0.2161481887 - - conidial pigment biosynthesis oxidase Arb2/brown2 [Aspergillus clavatus NRRL 1]
20 Hb_000024_090 0.2161481887 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000579_160 Hb_000579_160 Hb_109187_010 Hb_109187_010 Hb_000579_160--Hb_109187_010 Hb_003050_240 Hb_003050_240 Hb_000579_160--Hb_003050_240 Hb_000589_080 Hb_000589_080 Hb_000579_160--Hb_000589_080 Hb_003906_040 Hb_003906_040 Hb_000579_160--Hb_003906_040 Hb_036693_020 Hb_036693_020 Hb_000579_160--Hb_036693_020 Hb_178343_010 Hb_178343_010 Hb_000579_160--Hb_178343_010 Hb_109187_010--Hb_000589_080 Hb_109187_010--Hb_003050_240 Hb_109187_010--Hb_003906_040 Hb_109187_010--Hb_178343_010 Hb_003092_010 Hb_003092_010 Hb_109187_010--Hb_003092_010 Hb_003050_240--Hb_036693_020 Hb_003050_240--Hb_000589_080 Hb_063907_010 Hb_063907_010 Hb_003050_240--Hb_063907_010 Hb_000164_210 Hb_000164_210 Hb_003050_240--Hb_000164_210 Hb_000589_080--Hb_003092_010 Hb_000002_190 Hb_000002_190 Hb_000589_080--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_000589_080--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_000589_080--Hb_000005_170 Hb_003906_040--Hb_178343_010 Hb_012753_140 Hb_012753_140 Hb_003906_040--Hb_012753_140 Hb_003906_040--Hb_000589_080 Hb_005694_140 Hb_005694_140 Hb_003906_040--Hb_005694_140 Hb_116486_010 Hb_116486_010 Hb_003906_040--Hb_116486_010 Hb_003902_080 Hb_003902_080 Hb_036693_020--Hb_003902_080 Hb_036693_020--Hb_063907_010 Hb_001341_140 Hb_001341_140 Hb_036693_020--Hb_001341_140 Hb_036693_020--Hb_109187_010 Hb_178343_010--Hb_012753_140 Hb_120496_010 Hb_120496_010 Hb_178343_010--Hb_120496_010 Hb_017524_020 Hb_017524_020 Hb_178343_010--Hb_017524_020 Hb_001277_390 Hb_001277_390 Hb_178343_010--Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_178343_010--Hb_118941_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0908528 0 0 0.914656 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis