Hb_003902_080

Information

Type -
Description -
Location Contig3902: 112691-113783
Sequence    

Annotation

kegg
ID rcu:RCOM_0553630
description cysteine protease, putative (EC:1.3.1.74)
nr
ID XP_011038211.1
description PREDICTED: senescence-specific cysteine protease SAG39-like [Populus euphratica]
swissprot
ID A2XQE8
description Senescence-specific cysteine protease SAG39 OS=Oryza sativa subsp. indica GN=OsI_14861 PE=3 SV=1
trembl
ID B9SGK5
description Cysteine protease, putative OS=Ricinus communis GN=RCOM_0553630 PE=3 SV=1
Gene Ontology
ID GO:0008234
description senescence-specific cysteine protease sag39-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003902_080 0.0 - - PREDICTED: senescence-specific cysteine protease SAG39-like [Populus euphratica]
2 Hb_009193_080 0.107224828 - - -
3 Hb_036693_020 0.1346041426 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
4 Hb_119960_010 0.2048738244 - - PREDICTED: pectinesterase-like [Populus euphratica]
5 Hb_003050_240 0.2320467238 - - conserved hypothetical protein [Ricinus communis]
6 Hb_032907_010 0.2390958207 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
7 Hb_063907_010 0.2393355993 - - -
8 Hb_001341_140 0.2617453556 - - -
9 Hb_006620_080 0.2798371929 - - hypothetical protein JCGZ_12043 [Jatropha curcas]
10 Hb_011364_030 0.2891360246 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
11 Hb_000579_160 0.2952564878 - - PREDICTED: uncharacterized protein LOC104216549 isoform X1 [Nicotiana sylvestris]
12 Hb_006663_110 0.3267916043 - - PREDICTED: U-box domain-containing protein 34-like [Camelina sativa]
13 Hb_000184_140 0.3331589199 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000313_330 0.3435194467 - - PREDICTED: glucan endo-1,3-beta-glucosidase [Jatropha curcas]
15 Hb_000236_170 0.3480270242 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
16 Hb_000116_600 0.3501123193 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
17 Hb_109187_010 0.3517372498 - - PREDICTED: serine/threonine-protein kinase CDL1 [Cucumis sativus]
18 Hb_000164_210 0.3576655234 - - glutaredoxin-1, grx1, putative [Ricinus communis]
19 Hb_001369_680 0.3678507967 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
20 Hb_000794_040 0.3715782487 - - PREDICTED: RING-H2 finger protein ATL29-like [Jatropha curcas]

Gene co-expression network

sample Hb_003902_080 Hb_003902_080 Hb_009193_080 Hb_009193_080 Hb_003902_080--Hb_009193_080 Hb_036693_020 Hb_036693_020 Hb_003902_080--Hb_036693_020 Hb_119960_010 Hb_119960_010 Hb_003902_080--Hb_119960_010 Hb_003050_240 Hb_003050_240 Hb_003902_080--Hb_003050_240 Hb_032907_010 Hb_032907_010 Hb_003902_080--Hb_032907_010 Hb_063907_010 Hb_063907_010 Hb_003902_080--Hb_063907_010 Hb_009193_080--Hb_119960_010 Hb_006620_080 Hb_006620_080 Hb_009193_080--Hb_006620_080 Hb_011364_030 Hb_011364_030 Hb_009193_080--Hb_011364_030 Hb_009193_080--Hb_032907_010 Hb_009193_080--Hb_036693_020 Hb_036693_020--Hb_003050_240 Hb_000579_160 Hb_000579_160 Hb_036693_020--Hb_000579_160 Hb_036693_020--Hb_063907_010 Hb_001341_140 Hb_001341_140 Hb_036693_020--Hb_001341_140 Hb_109187_010 Hb_109187_010 Hb_036693_020--Hb_109187_010 Hb_119960_010--Hb_006620_080 Hb_119960_010--Hb_011364_030 Hb_119960_010--Hb_032907_010 Hb_000116_600 Hb_000116_600 Hb_119960_010--Hb_000116_600 Hb_003050_240--Hb_000579_160 Hb_003050_240--Hb_109187_010 Hb_000589_080 Hb_000589_080 Hb_003050_240--Hb_000589_080 Hb_003050_240--Hb_063907_010 Hb_000164_210 Hb_000164_210 Hb_003050_240--Hb_000164_210 Hb_032907_010--Hb_000116_600 Hb_032907_010--Hb_006620_080 Hb_032907_010--Hb_011364_030 Hb_063907_010--Hb_000579_160 Hb_011381_090 Hb_011381_090 Hb_063907_010--Hb_011381_090 Hb_063907_010--Hb_109187_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0275373 0 0 0.0456695 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis