Hb_006620_080

Information

Type -
Description -
Location Contig6620: 60022-61948
Sequence    

Annotation

kegg
ID rcu:RCOM_1032650
description hypothetical protein
nr
ID KDP32751.1
description hypothetical protein JCGZ_12043 [Jatropha curcas]
swissprot
ID A2WY46
description Protein terminal ear1 homolog OS=Oryza sativa subsp. indica GN=PLA2 PE=2 SV=1
trembl
ID A0A067K969
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12043 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006620_080 0.0 - - hypothetical protein JCGZ_12043 [Jatropha curcas]
2 Hb_011364_030 0.0095906284 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
3 Hb_119960_010 0.0765408612 - - PREDICTED: pectinesterase-like [Populus euphratica]
4 Hb_009193_080 0.1744396736 - - -
5 Hb_032907_010 0.2397943069 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
6 Hb_003902_080 0.2798371929 - - PREDICTED: senescence-specific cysteine protease SAG39-like [Populus euphratica]
7 Hb_000116_600 0.2908604894 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
8 Hb_001007_080 0.2985692172 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
9 Hb_123560_030 0.3298514114 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_000964_100 0.3513889403 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
11 Hb_101705_020 0.353436337 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000794_040 0.3536300117 - - PREDICTED: RING-H2 finger protein ATL29-like [Jatropha curcas]
13 Hb_000472_010 0.3593076712 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_001077_020 0.3653191331 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
15 Hb_004449_230 0.3766012628 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_010174_050 0.3974613717 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
17 Hb_000155_060 0.4017825549 - - ATP binding protein, putative [Ricinus communis]
18 Hb_006502_100 0.403857378 - - hypothetical protein POPTR_0003s01580g [Populus trichocarpa]
19 Hb_002847_020 0.4082735251 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
20 Hb_036693_020 0.4088900853 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]

Gene co-expression network

sample Hb_006620_080 Hb_006620_080 Hb_011364_030 Hb_011364_030 Hb_006620_080--Hb_011364_030 Hb_119960_010 Hb_119960_010 Hb_006620_080--Hb_119960_010 Hb_009193_080 Hb_009193_080 Hb_006620_080--Hb_009193_080 Hb_032907_010 Hb_032907_010 Hb_006620_080--Hb_032907_010 Hb_003902_080 Hb_003902_080 Hb_006620_080--Hb_003902_080 Hb_000116_600 Hb_000116_600 Hb_006620_080--Hb_000116_600 Hb_011364_030--Hb_119960_010 Hb_011364_030--Hb_009193_080 Hb_011364_030--Hb_032907_010 Hb_011364_030--Hb_003902_080 Hb_011364_030--Hb_000116_600 Hb_119960_010--Hb_009193_080 Hb_119960_010--Hb_003902_080 Hb_119960_010--Hb_032907_010 Hb_119960_010--Hb_000116_600 Hb_009193_080--Hb_003902_080 Hb_009193_080--Hb_032907_010 Hb_036693_020 Hb_036693_020 Hb_009193_080--Hb_036693_020 Hb_032907_010--Hb_000116_600 Hb_032907_010--Hb_003902_080 Hb_003902_080--Hb_036693_020 Hb_003050_240 Hb_003050_240 Hb_003902_080--Hb_003050_240 Hb_063907_010 Hb_063907_010 Hb_003902_080--Hb_063907_010 Hb_000116_600--Hb_009193_080 Hb_004242_070 Hb_004242_070 Hb_000116_600--Hb_004242_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0678569 0 0 0.0288661 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis