Hb_032907_010

Information

Type -
Description -
Location Contig32907: 12674-14976
Sequence    

Annotation

kegg
ID sly:101267371
description auxin-induced protein 6B-like
nr
ID XP_011004583.1
description PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
swissprot
ID Q6NMM0
description Auxin-responsive protein SAUR61 OS=Arabidopsis thaliana GN=SAUR61 PE=2 SV=1
trembl
ID F6I0U1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g03500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032907_010 0.0 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
2 Hb_000116_600 0.126212467 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_009193_080 0.1982379768 - - -
4 Hb_119960_010 0.2057327829 - - PREDICTED: pectinesterase-like [Populus euphratica]
5 Hb_003902_080 0.2390958207 - - PREDICTED: senescence-specific cysteine protease SAG39-like [Populus euphratica]
6 Hb_006620_080 0.2397943069 - - hypothetical protein JCGZ_12043 [Jatropha curcas]
7 Hb_011364_030 0.2453153236 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
8 Hb_036693_020 0.3316283859 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
9 Hb_002400_370 0.3473304802 - - PREDICTED: uncharacterized protein LOC105637607 [Jatropha curcas]
10 Hb_005542_100 0.3557577507 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0013s03910g [Populus trichocarpa]
11 Hb_001195_240 0.3674517521 transcription factor TF Family: MYB-related PREDICTED: protein RADIALIS-like 3 [Jatropha curcas]
12 Hb_000236_170 0.3767774964 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
13 Hb_004242_070 0.3769279017 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
14 Hb_123560_030 0.3794501646 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_063907_010 0.3797178732 - - -
16 Hb_000794_040 0.3823736282 - - PREDICTED: RING-H2 finger protein ATL29-like [Jatropha curcas]
17 Hb_000964_100 0.3903615413 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
18 Hb_000184_140 0.3939376444 - - conserved hypothetical protein [Ricinus communis]
19 Hb_116360_010 0.3952929709 - - -
20 Hb_001341_140 0.4041512179 - - -

Gene co-expression network

sample Hb_032907_010 Hb_032907_010 Hb_000116_600 Hb_000116_600 Hb_032907_010--Hb_000116_600 Hb_009193_080 Hb_009193_080 Hb_032907_010--Hb_009193_080 Hb_119960_010 Hb_119960_010 Hb_032907_010--Hb_119960_010 Hb_003902_080 Hb_003902_080 Hb_032907_010--Hb_003902_080 Hb_006620_080 Hb_006620_080 Hb_032907_010--Hb_006620_080 Hb_011364_030 Hb_011364_030 Hb_032907_010--Hb_011364_030 Hb_000116_600--Hb_119960_010 Hb_000116_600--Hb_006620_080 Hb_000116_600--Hb_011364_030 Hb_000116_600--Hb_009193_080 Hb_004242_070 Hb_004242_070 Hb_000116_600--Hb_004242_070 Hb_009193_080--Hb_119960_010 Hb_009193_080--Hb_003902_080 Hb_009193_080--Hb_006620_080 Hb_009193_080--Hb_011364_030 Hb_036693_020 Hb_036693_020 Hb_009193_080--Hb_036693_020 Hb_119960_010--Hb_006620_080 Hb_119960_010--Hb_011364_030 Hb_119960_010--Hb_003902_080 Hb_003902_080--Hb_036693_020 Hb_003050_240 Hb_003050_240 Hb_003902_080--Hb_003050_240 Hb_063907_010 Hb_063907_010 Hb_003902_080--Hb_063907_010 Hb_006620_080--Hb_011364_030 Hb_006620_080--Hb_003902_080 Hb_011364_030--Hb_003902_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.272929 0 0 0.23213 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0405948 0

CAGE analysis