Hb_001341_140

Information

Type -
Description -
Location Contig1341: 104754-105016
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_140 0.0 - - -
2 Hb_036693_020 0.2070148024 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
3 Hb_003050_240 0.2146059136 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001894_080 0.2423366102 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000579_160 0.2423521883 - - PREDICTED: uncharacterized protein LOC104216549 isoform X1 [Nicotiana sylvestris]
6 Hb_000236_170 0.2535443146 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
7 Hb_003902_080 0.2617453556 - - PREDICTED: senescence-specific cysteine protease SAG39-like [Populus euphratica]
8 Hb_063907_010 0.263342554 - - -
9 Hb_109187_010 0.2790355315 - - PREDICTED: serine/threonine-protein kinase CDL1 [Cucumis sativus]
10 Hb_000164_210 0.3047544968 - - glutaredoxin-1, grx1, putative [Ricinus communis]
11 Hb_000589_080 0.3069434538 - - hypothetical protein CICLE_v10032537mg [Citrus clementina]
12 Hb_003540_180 0.314498493 - - -
13 Hb_003906_040 0.3197039468 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like [Tarenaya hassleriana]
14 Hb_000042_350 0.333044085 - - hypothetical protein JCGZ_00710 [Jatropha curcas]
15 Hb_178343_010 0.3346069058 - - PREDICTED: two-component response regulator ARR17-like [Jatropha curcas]
16 Hb_004785_050 0.3347047337 - - PREDICTED: serine decarboxylase [Jatropha curcas]
17 Hb_003988_020 0.3351333503 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
18 Hb_009193_080 0.3356595993 - - -
19 Hb_002367_030 0.3360238571 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
20 Hb_001163_140 0.3400950333 - - -

Gene co-expression network

sample Hb_001341_140 Hb_001341_140 Hb_036693_020 Hb_036693_020 Hb_001341_140--Hb_036693_020 Hb_003050_240 Hb_003050_240 Hb_001341_140--Hb_003050_240 Hb_001894_080 Hb_001894_080 Hb_001341_140--Hb_001894_080 Hb_000579_160 Hb_000579_160 Hb_001341_140--Hb_000579_160 Hb_000236_170 Hb_000236_170 Hb_001341_140--Hb_000236_170 Hb_003902_080 Hb_003902_080 Hb_001341_140--Hb_003902_080 Hb_036693_020--Hb_003050_240 Hb_036693_020--Hb_003902_080 Hb_036693_020--Hb_000579_160 Hb_063907_010 Hb_063907_010 Hb_036693_020--Hb_063907_010 Hb_109187_010 Hb_109187_010 Hb_036693_020--Hb_109187_010 Hb_003050_240--Hb_000579_160 Hb_003050_240--Hb_109187_010 Hb_000589_080 Hb_000589_080 Hb_003050_240--Hb_000589_080 Hb_003050_240--Hb_063907_010 Hb_000164_210 Hb_000164_210 Hb_003050_240--Hb_000164_210 Hb_001894_080--Hb_000236_170 Hb_004947_010 Hb_004947_010 Hb_001894_080--Hb_004947_010 Hb_033153_080 Hb_033153_080 Hb_001894_080--Hb_033153_080 Hb_016875_010 Hb_016875_010 Hb_001894_080--Hb_016875_010 Hb_094529_020 Hb_094529_020 Hb_001894_080--Hb_094529_020 Hb_000579_160--Hb_109187_010 Hb_000579_160--Hb_000589_080 Hb_003906_040 Hb_003906_040 Hb_000579_160--Hb_003906_040 Hb_178343_010 Hb_178343_010 Hb_000579_160--Hb_178343_010 Hb_000042_350 Hb_000042_350 Hb_000236_170--Hb_000042_350 Hb_003988_020 Hb_003988_020 Hb_000236_170--Hb_003988_020 Hb_002003_100 Hb_002003_100 Hb_000236_170--Hb_002003_100 Hb_006663_110 Hb_006663_110 Hb_000236_170--Hb_006663_110 Hb_009193_080 Hb_009193_080 Hb_003902_080--Hb_009193_080 Hb_119960_010 Hb_119960_010 Hb_003902_080--Hb_119960_010 Hb_003902_080--Hb_003050_240 Hb_032907_010 Hb_032907_010 Hb_003902_080--Hb_032907_010 Hb_003902_080--Hb_063907_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26779 0 0 13.1482 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.44986 0 0 0

CAGE analysis