Hb_016875_010

Information

Type -
Description -
Location Contig16875: 88-912
Sequence    

Annotation

kegg
ID rcu:RCOM_0381140
description receptor protein kinase, putative
nr
ID XP_002534282.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID C0LGQ4
description Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1
trembl
ID B9T7R3
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_0381140 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable lrr receptor-like serine threonine-protein kinase mrh1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016875_010 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_004947_010 0.1020896583 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
3 Hb_000160_050 0.148581092 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
4 Hb_003095_080 0.1608583295 - - -
5 Hb_008054_060 0.1613937647 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
6 Hb_033153_080 0.1661633855 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
7 Hb_094529_020 0.2125402311 - - leucine-rich repeat containing protein, putative [Ricinus communis]
8 Hb_112440_010 0.2189783022 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
9 Hb_004267_030 0.2339616546 - - cytochrome P450, putative [Ricinus communis]
10 Hb_001754_160 0.2490573945 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
11 Hb_001633_190 0.2548327594 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
12 Hb_001248_120 0.2677336968 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001894_080 0.2797276232 - - ATP binding protein, putative [Ricinus communis]
14 Hb_010921_040 0.2877342846 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
15 Hb_000896_070 0.2932578674 - - ammonium transporter, putative [Ricinus communis]
16 Hb_005306_120 0.2980507135 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002367_030 0.301103302 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
18 Hb_001946_020 0.3048033846 - - hypothetical protein RCOM_0224470 [Ricinus communis]
19 Hb_017400_010 0.3066632331 - - unnamed protein product [Vitis vinifera]
20 Hb_003266_070 0.3106990621 - - -

Gene co-expression network

sample Hb_016875_010 Hb_016875_010 Hb_004947_010 Hb_004947_010 Hb_016875_010--Hb_004947_010 Hb_000160_050 Hb_000160_050 Hb_016875_010--Hb_000160_050 Hb_003095_080 Hb_003095_080 Hb_016875_010--Hb_003095_080 Hb_008054_060 Hb_008054_060 Hb_016875_010--Hb_008054_060 Hb_033153_080 Hb_033153_080 Hb_016875_010--Hb_033153_080 Hb_094529_020 Hb_094529_020 Hb_016875_010--Hb_094529_020 Hb_004947_010--Hb_008054_060 Hb_004947_010--Hb_033153_080 Hb_004947_010--Hb_094529_020 Hb_112440_010 Hb_112440_010 Hb_004947_010--Hb_112440_010 Hb_004947_010--Hb_000160_050 Hb_000160_050--Hb_033153_080 Hb_000160_050--Hb_094529_020 Hb_051677_010 Hb_051677_010 Hb_000160_050--Hb_051677_010 Hb_002391_060 Hb_002391_060 Hb_000160_050--Hb_002391_060 Hb_004267_030 Hb_004267_030 Hb_003095_080--Hb_004267_030 Hb_001946_020 Hb_001946_020 Hb_003095_080--Hb_001946_020 Hb_007181_030 Hb_007181_030 Hb_003095_080--Hb_007181_030 Hb_003095_080--Hb_008054_060 Hb_003095_080--Hb_112440_010 Hb_008054_060--Hb_112440_010 Hb_000718_050 Hb_000718_050 Hb_008054_060--Hb_000718_050 Hb_185111_010 Hb_185111_010 Hb_008054_060--Hb_185111_010 Hb_033153_080--Hb_094529_020 Hb_003540_180 Hb_003540_180 Hb_033153_080--Hb_003540_180 Hb_002367_030 Hb_002367_030 Hb_033153_080--Hb_002367_030 Hb_001248_120 Hb_001248_120 Hb_094529_020--Hb_001248_120 Hb_003411_120 Hb_003411_120 Hb_094529_020--Hb_003411_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.939089 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.2674 0 0.246414 0

CAGE analysis